Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0168
(650 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 242 1e-64
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 219 1e-57
Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 128 3e-30
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 38 0.005
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 38 0.005
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 38 0.005
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 37 0.014
Z81483-8|CAB03966.2| 1776|Caenorhabditis elegans Hypothetical pr... 35 0.044
Z81471-1|CAB03887.2| 1776|Caenorhabditis elegans Hypothetical pr... 35 0.044
U40798-4|AAA81474.2| 430|Caenorhabditis elegans Hypothetical pr... 29 2.2
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 29 2.9
Z81474-1|CAB03901.1| 123|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z73424-7|CAA97783.1| 294|Caenorhabditis elegans Hypothetical pr... 29 3.8
AL023839-3|CAA19509.1| 294|Caenorhabditis elegans Hypothetical ... 29 3.8
AF106575-12|AAC78165.1| 374|Caenorhabditis elegans Hypothetical... 28 6.6
AC024876-11|AAF60895.1| 365|Caenorhabditis elegans Hypothetical... 28 6.6
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z81522-1|CAB61004.1| 264|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr... 27 8.7
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein... 27 8.7
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 242 bits (593), Expect = 1e-64
Identities = 116/216 (53%), Positives = 153/216 (70%), Gaps = 2/216 (0%)
Frame = +1
Query: 4 RGSSVGNDILGFDNMGNVVNKPD--HGTLDWVKICEKSSKVITFIDLAGHERYLKTTVFG 177
R SSVGNDILGFD GN+VNKPD + LDWV+I +K++TFIDLAGHE+YLKTT+FG
Sbjct: 187 RTSSVGNDILGFDVHGNIVNKPDPHNHNLDWVQIGSDCAKLVTFIDLAGHEKYLKTTIFG 246
Query: 178 MTGHAPDFGMLMIGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDNLKLLI 357
MTGH PD+ MLMIGAN GI+G TKEHL LAL+L VPV++VVTKIDMCP N+L++ +K +
Sbjct: 247 MTGHMPDYTMLMIGANMGIIGTTKEHLSLALSLHVPVYLVVTKIDMCPANILEETMKNIT 306
Query: 358 RILKSSGCRKVPVMVKSKDDVIVSATNFVSQRLCPIFQVSNVSGXXXXXXXXXXXXXKTR 537
R+++S+ +K+P++V++ DDV+ +A NF S+++CPIFQVSNV G R
Sbjct: 307 RLVRSA--KKLPILVRNMDDVVHAAVNFPSKKVCPIFQVSNVEGTNLPLLRQFLNIVPLR 364
Query: 538 MPSHEDKPAEFQIDDTYXXXXXXXXXXXXALAGVVR 645
+E+ PA FQIDD Y L+G +R
Sbjct: 365 RQLNENDPAHFQIDDIYWVDGVGTIASGTLLSGTIR 400
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 219 bits (535), Expect = 1e-57
Identities = 110/217 (50%), Positives = 148/217 (68%), Gaps = 3/217 (1%)
Frame = +1
Query: 4 RGSSVGNDILGFDNMGNVVNKPD--HGTLDWVKICEKSSKVITFIDLAGHERYLKTTVFG 177
R SSVGNDILGFD GN+VNKPD + LDWV+I +K++TFIDLAGHE YLKTT+FG
Sbjct: 187 RTSSVGNDILGFDVHGNIVNKPDPHNHNLDWVQIGSDCAKLVTFIDLAGHEIYLKTTIFG 246
Query: 178 M-TGHAPDFGMLMIGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDNLKLL 354
M +A ++ MLMIGAN GI+G TKEHL LAL+L VPV++VVTKIDMCP +L++ +K +
Sbjct: 247 MHRPYARNYTMLMIGANMGIIGTTKEHLSLALSLHVPVYLVVTKIDMCPAYILEETMKNI 306
Query: 355 IRILKSSGCRKVPVMVKSKDDVIVSATNFVSQRLCPIFQVSNVSGXXXXXXXXXXXXXKT 534
R+++S+ +K+P++V++ DD + +A NF S+++CPIFQVSNV G
Sbjct: 307 TRLVRSA--KKLPILVRNMDDCVHAAVNFPSKKVCPIFQVSNVEGTNLPLLRQFLNMVPL 364
Query: 535 RMPSHEDKPAEFQIDDTYXXXXXXXXXXXXALAGVVR 645
R +E+ PA FQIDD Y L+G +R
Sbjct: 365 RRQLNENDPAHFQIDDIYWVDGVGTIASGTLLSGTIR 401
>Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical
protein T04H1.2 protein.
Length = 588
Score = 128 bits (310), Expect = 3e-30
Identities = 65/160 (40%), Positives = 99/160 (61%)
Frame = +1
Query: 10 SSVGNDILGFDNMGNVVNKPDHGTLDWVKICEKSSKVITFIDLAGHERYLKTTVFGMTGH 189
SSV ND++GFDN G +VN + + V EKSSK++T IDLAG +Y KTT+ G+TG+
Sbjct: 217 SSVCNDVIGFDNRGKLVNYAQNSLEEMV---EKSSKLVTLIDLAGDAKYQKTTIHGLTGY 273
Query: 190 APDFGMLMIGANAGIVGMTKEHLGLALALSVPVFVVVTKIDMCPPNVLQDNLKLLIRILK 369
P F L++ A+ GI T+EHLGL AL++P+FV++TK+D+ L+ +K + ++
Sbjct: 274 TPHFACLVVAADRGITWATREHLGLIAALNIPMFVLITKMDLVDRQGLKKIIKDVSNLVA 333
Query: 370 SSGCRKVPVMVKSKDDVIVSATNFVSQRLCPIFQVSNVSG 489
+G VK+K D + +A + P+ VS+VSG
Sbjct: 334 KAGMTAREKRVKTKRDAVKAAQELCVGSIVPVLAVSSVSG 373
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 38.3 bits (85), Expect = 0.005
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Frame = +1
Query: 103 EKSSKVITFIDLAGHERYLKTTVFGMTGHAPDFGMLMIGANAGIVGMTKEHLGLALALSV 282
E + + ID GH Y+K + G + +L++ A G + T+EHL LA + V
Sbjct: 108 ETAKRHYAHIDCPGHADYIKNMITGAA--QMEGAILVVAATDGPMPQTREHLLLARQVGV 165
Query: 283 P---VFVVVTKIDMCPPNVLQDNLKLLIR 360
P + V + K+D P ++ +++ IR
Sbjct: 166 PLDNIVVFMNKVDEVPDAETRELVEMDIR 194
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 38.3 bits (85), Expect = 0.005
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Frame = +1
Query: 103 EKSSKVITFIDLAGHERYLKTTVFGMTGHAPDFGMLMIGANAGIVGMTKEHLGLALALSV 282
E + + ID GH Y+K + G + +L++ A G + T+EHL LA + V
Sbjct: 109 ETAKRHYAHIDCPGHADYIKNMITGAA--QMEGAILVVAATDGPMPQTREHLLLARQVGV 166
Query: 283 P---VFVVVTKIDMCPPNVLQDNLKLLIR 360
P + V + K+D P ++ +++ IR
Sbjct: 167 PLDNIVVFMNKVDEVPDAETRELVEMDIR 195
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 38.3 bits (85), Expect = 0.005
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Frame = +1
Query: 103 EKSSKVITFIDLAGHERYLKTTVFGMTGHAPDFGMLMIGANAGIVGMTKEHLGLALALSV 282
E + + ID GH Y+K + G + +L++ A G + T+EHL LA + V
Sbjct: 109 ETAKRHYAHIDCPGHADYIKNMITGAA--QMEGAILVVAATDGPMPQTREHLLLARQVGV 166
Query: 283 P---VFVVVTKIDMCPPNVLQDNLKLLIR 360
P + V + K+D P ++ +++ IR
Sbjct: 167 PLDNIVVFMNKVDEVPDAETRELVEMDIR 195
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 36.7 bits (81), Expect = 0.014
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Frame = +1
Query: 109 SSKVITFIDLAGHERYLKTTVFGMTGHAPDFGMLMIGANAGIVGMTKEHLGLALALSV-P 285
S + + ID GH ++ + T D +++I AGI T EHL LA
Sbjct: 70 SGRRLALIDCPGHSGLIRAVLAASTVF--DMAIVIIDVVAGIQPQTAEHLLLASKFCPNR 127
Query: 286 VFVVVTKIDMCPPNVLQDNLKLLIRILKSSG 378
V +V+ K D+ + + ++ K + + LKS G
Sbjct: 128 VIIVLNKCDLAEKSKISESAKKVRKGLKSMG 158
>Z81483-8|CAB03966.2| 1776|Caenorhabditis elegans Hypothetical
protein C14B4.2 protein.
Length = 1776
Score = 35.1 bits (77), Expect = 0.044
Identities = 22/69 (31%), Positives = 33/69 (47%)
Frame = +1
Query: 103 EKSSKVITFIDLAGHERYLKTTVFGMTGHAPDFGMLMIGANAGIVGMTKEHLGLALALSV 282
E+ + + F GHE+ +KTTV + PD + + G N + G+ K H L L +V
Sbjct: 71 ERKPEFVIFASGLGHEKEIKTTVKEINTKIPD--LTIAGTNLEVTGILKAH-NLTLESTV 127
Query: 283 PVFVVVTKI 309
V KI
Sbjct: 128 GTMHVYAKI 136
>Z81471-1|CAB03887.2| 1776|Caenorhabditis elegans Hypothetical
protein C14B4.2 protein.
Length = 1776
Score = 35.1 bits (77), Expect = 0.044
Identities = 22/69 (31%), Positives = 33/69 (47%)
Frame = +1
Query: 103 EKSSKVITFIDLAGHERYLKTTVFGMTGHAPDFGMLMIGANAGIVGMTKEHLGLALALSV 282
E+ + + F GHE+ +KTTV + PD + + G N + G+ K H L L +V
Sbjct: 71 ERKPEFVIFASGLGHEKEIKTTVKEINTKIPD--LTIAGTNLEVTGILKAH-NLTLESTV 127
Query: 283 PVFVVVTKI 309
V KI
Sbjct: 128 GTMHVYAKI 136
>U40798-4|AAA81474.2| 430|Caenorhabditis elegans Hypothetical
protein R13A1.3 protein.
Length = 430
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/64 (25%), Positives = 30/64 (46%)
Frame = -1
Query: 596 GTEYVSSIWNSAGLSSCEGILVFNRFRNIVNSSRFSPLTFETWNIGHSLCETKLVALTMT 417
G +Y S W A + + + N V+ F PL+F + + ++ +T L+A +
Sbjct: 274 GNDYSS--WIRAAIIGSSLLFFHSYIENAVSLGIFCPLSFSFYFLSYAFLQTSLIACSKC 331
Query: 416 SSFD 405
S F+
Sbjct: 332 SIFN 335
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/61 (29%), Positives = 27/61 (44%)
Frame = +1
Query: 130 IDLAGHERYLKTTVFGMTGHAPDFGMLMIGANAGIVGMTKEHLGLALALSVPVFVVVTKI 309
ID GHE + G + DF +L++ G+ T E L L + P + + KI
Sbjct: 554 IDTPGHESFSNLRTRGSS--LCDFAILVVDIMHGLEPQTIESLKLLIKGKTPFVIALNKI 611
Query: 310 D 312
D
Sbjct: 612 D 612
>Z81474-1|CAB03901.1| 123|Caenorhabditis elegans Hypothetical
protein C18D4.3 protein.
Length = 123
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Frame = -3
Query: 312 VNLGDDNEYWH*QGK-SEPEVFLGH---SYYTRVGSDHEHPKVGSVSRHPKDRSFEVPLV 145
+N DD E++H QGK + +V G S+YTRV D + V +P +P++
Sbjct: 30 INSTDDFEWYHKQGKYGDSQVGNGRVLASFYTRVFCDSPYEPVAFSENNPPIYLDNLPVI 89
>Z73424-7|CAA97783.1| 294|Caenorhabditis elegans Hypothetical
protein Y39A1C.3 protein.
Length = 294
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 384 EGSGDGEVEGRCHCQRHQLRFAKAVPNIPSFEREWGEPRA 503
E SGDGE G+ +RH K P+ PS E+ G+ A
Sbjct: 220 ENSGDGETRGKRRTRRH----GKLQPDAPSGEKGDGDAAA 255
>AL023839-3|CAA19509.1| 294|Caenorhabditis elegans Hypothetical
protein Y39A1C.3 protein.
Length = 294
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 384 EGSGDGEVEGRCHCQRHQLRFAKAVPNIPSFEREWGEPRA 503
E SGDGE G+ +RH K P+ PS E+ G+ A
Sbjct: 220 ENSGDGETRGKRRTRRH----GKLQPDAPSGEKGDGDAAA 255
>AF106575-12|AAC78165.1| 374|Caenorhabditis elegans Hypothetical
protein K04F1.6 protein.
Length = 374
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = -1
Query: 491 SPLTFETWNIGHSLCETKLVALTMTSSFDFTITGTFLHPDDLRILMSSLRLSCRTL-GGH 315
+P+T ET N + C T L + + D T L ++R+L SL++ +L GH
Sbjct: 56 NPVTSETINSFPTNCSTVCANLVLDETIDVTEEKLALTFKNMRVLFGSLKVVSTSLSNGH 115
>AC024876-11|AAF60895.1| 365|Caenorhabditis elegans Hypothetical
protein Y94H6A.2 protein.
Length = 365
Score = 27.9 bits (59), Expect = 6.6
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = +3
Query: 141 WTREVPQNYGLWDDGTRSRLWDAHDRSQ 224
W E Q++ WDDG S + + D ++
Sbjct: 170 WAEEYRQDHSYWDDGVLSLIHNVQDNNE 197
>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -3
Query: 426 DNDIVLRLHHHRNLPAPR*LEDPDEQLEIVLQNVRR 319
D LRLH R R LE +EQLE+ LQ +++
Sbjct: 3527 DEAKALRLHKQRLEHRSRILEQQNEQLEMQLQRLKK 3562
>Z81522-1|CAB61004.1| 264|Caenorhabditis elegans Hypothetical
protein F15D3.1b protein.
Length = 264
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -3
Query: 426 DNDIVLRLHHHRNLPAPR*LEDPDEQLEIVLQNVRR 319
D LRLH R R LE +EQLE+ LQ +++
Sbjct: 117 DEAKALRLHKQRLEHRSRILEQQNEQLEMQLQRLKK 152
>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -3
Query: 426 DNDIVLRLHHHRNLPAPR*LEDPDEQLEIVLQNVRR 319
D LRLH R R LE +EQLE+ LQ +++
Sbjct: 3527 DEAKALRLHKQRLEHRSRILEQQNEQLEMQLQRLKK 3562
>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
protein.
Length = 3674
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -3
Query: 426 DNDIVLRLHHHRNLPAPR*LEDPDEQLEIVLQNVRR 319
D LRLH R R LE +EQLE+ LQ +++
Sbjct: 3527 DEAKALRLHKQRLEHRSRILEQQNEQLEMQLQRLKK 3562
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,665,642
Number of Sequences: 27780
Number of extensions: 317974
Number of successful extensions: 1058
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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