Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0168
         (650 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g17220.1 68414.m02098 translation initiation factor IF-2, chl...    38   0.004
At3g48090.1 68416.m05243 disease resistance protein (EDS1) ident...    31   0.88 
At2g45570.1 68415.m05667 cytochrome P450 76C2, putative (CYP76C2...    31   0.88 
At5g44260.1 68418.m05416 zinc finger (CCCH-type) family protein ...    30   1.2  
At2g45560.1 68415.m05665 cytochrome P450 family protein                29   2.7  
At2g45550.1 68415.m05664 cytochrome P450 family protein                29   3.5  
At3g61040.1 68416.m06830 cytochrome P450 family protein similar ...    27   8.2  
At1g74120.1 68414.m08584 mitochondrial transcription termination...    27   8.2  

>At1g17220.1 68414.m02098 translation initiation factor IF-2,
           chloroplast, putative similar to SP|P57997|IF2C_PHAVU
           Translation initiation factor IF-2, chloroplast
           precursor (PvIF2cp) {Phaseolus vulgaris}
          Length = 1026

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
 Frame = +1

Query: 127 FIDLAGHERYLKTTVFGMTGHAPDFGMLMIGANAGIVGMTKEHLGLALALSVPVFVVVTK 306
           F+D  GHE +      G      D  ++++ A+ GI   T E +  A A +VP+ + + K
Sbjct: 556 FLDTPGHEAFGAMRARG--ARVTDIAIIVVAADDGIRPQTNEAIAHAKAAAVPIVIAINK 613

Query: 307 ID---MCPPNVLQD 339
           ID     P  V+Q+
Sbjct: 614 IDKEGASPDRVMQE 627


>At3g48090.1 68416.m05243 disease resistance protein (EDS1)
           identical to disease resistance protein/lipase homolog
           EDS1 GI:4454567; contains Pfam profile PF01764: Lipase
          Length = 623

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
 Frame = +1

Query: 37  FDNMGNVVNK---PDH--GTLDWVKICEKSSKVITFIDLAGHERYLK 162
           FD +  ++ K   PD   G +DW+K+  +  +++  +D+A + R+LK
Sbjct: 432 FDEVLGLMKKCQLPDEFEGDIDWIKLATRYRRLVEPLDIANYHRHLK 478


>At2g45570.1 68415.m05667 cytochrome P450 76C2, putative (CYP76C2)
           (YLS6) identical to SP|O64637 Cytochrome P450 76C2 (EC
           1.14.-.-) {Arabidopsis thaliana}, cDNA YLS6 mRNA for
           cytochrome P450 (CYP76C2), partial cds GI:13122289
          Length = 512

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
 Frame = -3

Query: 408 RLHHHRNLPAPR*LEDPDEQLEIVLQNVRRAHVN---LGDDNEYWH*QGKSEPEVFLGHS 238
           RLH    L  PR  E   E L  ++    +  VN   +G D   W    + +PE FLG  
Sbjct: 372 RLHPAAPLLVPRKAESDVEVLGFMVPKDTQVFVNVWAIGRDPNVWENSSRFKPERFLGKD 431

Query: 237 YYTRVGSDHEHPKVGSVSR 181
              R G D+E    G+  R
Sbjct: 432 IDLR-GRDYELTPFGAGRR 449


>At5g44260.1 68418.m05416 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 381

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
 Frame = -3

Query: 402 HHHRNLPAPR*LEDPDEQLEIVLQNVRRAHVNLGDDNEYWH*QGKSEPEVFLGHSYYTRV 223
           HHH  LP    L+  D  L++   +  R  ++      Y H Q +  P  F G  +  R 
Sbjct: 284 HHHHRLPPW--LDVGDRDLQLQQSSPLRFALSPSSTPSYLHGQLQPPPSSFFGDEFTPRG 341

Query: 222 GSDHEHPKVGSVSRHPKDR-SFEV 154
           G   +     + +   +D+ SFEV
Sbjct: 342 GRLSDFSVAAAAAAQARDKNSFEV 365


>At2g45560.1 68415.m05665 cytochrome P450 family protein
          Length = 512

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 26/79 (32%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
 Frame = -3

Query: 408 RLHHHRNLPAPR*LEDPDEQLEIVLQNVRRAHVN---LGDDNEYWH*QGKSEPEVFLGHS 238
           RLH    L  PR  E   E L  ++    +  VN   +G D   W    + EPE FLG  
Sbjct: 371 RLHTPVPLLIPRKAESDAEILGFMVLKDTQVLVNVWAIGRDPSVWDNPSQFEPERFLGKD 430

Query: 237 YYTRVGSDHEHPKVGSVSR 181
              R G D+E    G+  R
Sbjct: 431 MDVR-GRDYELTPFGAGRR 448


>At2g45550.1 68415.m05664 cytochrome P450 family protein 
          Length = 511

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
 Frame = -3

Query: 408 RLHHHRNLPAPR*LEDPDEQLEIVLQNVRRAHVN---LGDDNEYWH*QGKSEPEVFLGHS 238
           RLH    L  PR  E   E L  ++    +  VN   +G D   W    + EPE F+G  
Sbjct: 371 RLHPAAPLLVPRKAESDVEVLGFMVPKDTQVLVNVWAIGRDPSVWENPSQFEPERFMGKD 430

Query: 237 YYTRVGSDHEHPKVGSVSR 181
              + G D+E    G   R
Sbjct: 431 IDVK-GRDYELTPFGGGRR 448


>At3g61040.1 68416.m06830 cytochrome P450 family protein similar to
           cytochrome P450 monooxygenase - Arabidopsis thaliana,
           EMBL:D78600
          Length = 498

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
 Frame = -3

Query: 411 LRLHHHRNLPAPR*LEDPDEQL-EIVLQNVRRAHVN---LGDDNEYWH*QGKSEPEVFLG 244
           LRLH       PR  E  D Q+ E ++    +  VN   +G D   W    + EPE FLG
Sbjct: 358 LRLHPPAPFLVPRKSESDDVQIFEFLIPKNTQVLVNVWAIGRDPNVWKNPTQFEPERFLG 417


>At1g74120.1 68414.m08584 mitochondrial transcription termination
           factor-related / mTERF-related contains Pfam profile
           PF02536: mTERF
          Length = 445

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 5/122 (4%)
 Frame = +1

Query: 58  VNKPDHGTLDWVKICEKSSKVITFIDLAGH-ERYLKTTVFGMTGHAPDFGMLMIGANAGI 234
           +N  D+    + +I   SS+++T I+ + + +R L   +    G  P      +  N  +
Sbjct: 9   INLRDYPITLFNQIRSLSSRILTPINQSHYRKRILLANLLQRYGFPPSSLQHFLSRNNHL 68

Query: 235 VGM----TKEHLGLALALSVPVFVVVTKIDMCPPNVLQDNLKLLIRILKSSGCRKVPVMV 402
           +      T+  LG+ L+L +P   +V+ I  C PNVL+       R+   S C K  V+ 
Sbjct: 69  LNSDLVETEISLGILLSLKIPQKSLVSLISDC-PNVLRSEFLRKWRV-PLSNCGKHGVVS 126

Query: 403 KS 408
            S
Sbjct: 127 SS 128


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,039,764
Number of Sequences: 28952
Number of extensions: 303565
Number of successful extensions: 999
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)