Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0167
         (746 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22714| Best HMM Match : TPR_2 (HMM E-Value=1.2e-17)                 49   5e-06
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)         43   3e-04
SB_44774| Best HMM Match : TPR_2 (HMM E-Value=6.3e-15)                 33   0.19 
SB_46721| Best HMM Match : Tetraspannin (HMM E-Value=4e-35)            33   0.25 
SB_5539| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.033)           33   0.33 
SB_7902| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.3  
SB_50152| Best HMM Match : TPR_1 (HMM E-Value=0.0019)                  30   1.7  
SB_8342| Best HMM Match : FKBP_C (HMM E-Value=0)                       30   2.3  
SB_51830| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_51642| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_43466| Best HMM Match : DEAD (HMM E-Value=1.8)                      29   4.0  
SB_57286| Best HMM Match : zf-C2H2 (HMM E-Value=8.1)                   29   5.3  
SB_42515| Best HMM Match : TPR_2 (HMM E-Value=2e-14)                   29   5.3  
SB_37066| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_32832| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_52926| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_39375| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_4710| Best HMM Match : Bowman-Birk_leg (HMM E-Value=0.78)           29   5.3  
SB_40885| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_17505| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_27816| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  
SB_6274| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.2  

>SB_22714| Best HMM Match : TPR_2 (HMM E-Value=1.2e-17)
          Length = 455

 Score = 48.8 bits (111), Expect = 5e-06
 Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
 Frame = +1

Query: 460 DEPQLAVQLYRRALDILD--ESEGGITDPTPSGELTFANQALKELLDERLRVHNNMAAAQ 633
           D P+ AV++           + E  ++    + +L   N+  KE   E+  ++ N AA Q
Sbjct: 4   DNPKSAVEIKEEGNKYFKAGDYEAALSSYAAALKLYSGNEKDKEKQKEKAVIYKNRAACQ 63

Query: 634 LKAGAYEAALQAVTRVLSCQPKNAKALYRKSRILSA 741
           LK   YEAA++  T+ L   P + KAL+R+S+   A
Sbjct: 64  LKLEKYEAAIKDATKALDIVPNDPKALFRRSQAFEA 99


>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
          Length = 741

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 31/132 (23%), Positives = 62/132 (46%), Gaps = 6/132 (4%)
 Frame = +1

Query: 352 VLHDWSEEPEHDVLSIAEKMEIGIRRRARGNWWYGRDEPQLAVQLYRRALDILDE---SE 522
           V  +W ++ + D   +   +E+  + +  GN  + + + ++A + Y++AL  LDE   S+
Sbjct: 278 VYPNWPKDADIDFSKVELVVEVAEKLKVIGNEQFKQQKYEVAKKKYKKALRYLDEFQNSD 337

Query: 523 GGITDPTPSGELTFANQA---LKELLDERLRVHNNMAAAQLKAGAYEAALQAVTRVLSCQ 693
              +D     E     +     K++    L  + N AA +LK   Y +A++     L   
Sbjct: 338 SSDSDDEKEEEDETNKKVEDNAKKMAAIALPCYLNSAACKLKLAEYPSAIEDCNEALKLD 397

Query: 694 PKNAKALYRKSR 729
             +AKAL+R+ +
Sbjct: 398 ANSAKALFRRGQ 409


>SB_44774| Best HMM Match : TPR_2 (HMM E-Value=6.3e-15)
          Length = 206

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 28/120 (23%), Positives = 55/120 (45%), Gaps = 7/120 (5%)
 Frame = +1

Query: 373 EPEHDVLSIAEKMEIGIRRRARGNWWYGRDEPQLAVQLYRRALDILDESEGGITDPTPS- 549
           EPE+      +K+++   ++A GN  YG      A+ LY +A++          + + + 
Sbjct: 19  EPENSPEEEQDKVKLAEAKKAEGNREYGLKNYVSAIALYSKAIEFAPHVATFYGNRSAAY 78

Query: 550 GELTFANQALKELL------DERLRVHNNMAAAQLKAGAYEAALQAVTRVLSCQPKNAKA 711
             ++  ++AL++ L      +  ++ H   A   L  G+   AL+ + +VL   PKN  A
Sbjct: 79  MMISNYDKALEDALLSIEIDNNFVKGHYRAAKCHLAMGSASNALREIRKVLELDPKNKDA 138


>SB_46721| Best HMM Match : Tetraspannin (HMM E-Value=4e-35)
          Length = 642

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 11/43 (25%), Positives = 24/43 (55%)
 Frame = +1

Query: 325 PDTWLEAKLVLHDWSEEPEHDVLSIAEKMEIGIRRRARGNWWY 453
           P+   +  +VL D+ E  + + L++ +  ++ + R+  G WWY
Sbjct: 256 PEAQSDIYVVLDDFDEADQENELNLVKHEKVRVIRKTEGGWWY 298


>SB_5539| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.033)
          Length = 551

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 5/56 (8%)
 Frame = -2

Query: 166 LAIPHCLLNIFY-LISFLHNVVTVFYFEFIADSAYVPSLW----SGSTCSPGDPLV 14
           L +P+ +   +Y ++S L  +V   ++EF+  S  + + W    S ++CSPGDPLV
Sbjct: 386 LLVPYGISTCWYCMVSVLTGIV---WYEFLLVSYGINAYWYRMVSSNSCSPGDPLV 438


>SB_7902| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1020

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 244 LHRQILEQVAKYIPHLCTLKLMLGPNLAI 158
           LH+Q++   A  + +LC L +M GP L I
Sbjct: 802 LHQQVIRSFAMILSNLCLLVIMFGPKLYI 830


>SB_50152| Best HMM Match : TPR_1 (HMM E-Value=0.0019)
          Length = 94

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +1

Query: 580 KELLDERLRVHNNMAAAQLKAGAYEAALQAVTRVLSCQPKNAKALYRKSR 729
           K++    L  + N AA +LK   Y +A++     L     +AKAL+R+ +
Sbjct: 33  KKMAAIALPCYLNSAACKLKLAEYPSAIEDCNEALKLDANSAKALFRRGQ 82


>SB_8342| Best HMM Match : FKBP_C (HMM E-Value=0)
          Length = 266

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +1

Query: 142 LGDNEVLQGLDLALTLMYRGEECILQLAPRFAYGEMG 252
           LG   V+QG +  L  M  GE+  L + P  AYGE G
Sbjct: 76  LGKGMVIQGWEQGLLDMCIGEKRKLTIPPHLAYGENG 112


>SB_51830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 582

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +1

Query: 610 HNNMAAAQLKAGAYEAALQAVTRVLSCQPKNAKALYRKSRILSAM 744
           + N AAA  +   +E  ++  T+ L    K  KAL R++R L  +
Sbjct: 183 YQNRAAAYEQMNQFENVVEEATKALELNSKYTKALMRRARALEKL 227


>SB_51642| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 570

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 22/78 (28%), Positives = 34/78 (43%)
 Frame = +1

Query: 454 GRDEPQLAVQLYRRALDILDESEGGITDPTPSGELTFANQALKELLDERLRVHNNMAAAQ 633
           G+D P +A QL   AL   ++ +    +      L      L        +  NN+A+A 
Sbjct: 315 GKDHPDVAKQLNNLALLCQNQGKYDEVEQYYQRALEIYTTKLGPDDPNVAKTKNNLASAY 374

Query: 634 LKAGAYEAALQAVTRVLS 687
           LK G Y+AA     +VL+
Sbjct: 375 LKQGKYKAAETLYKQVLT 392


>SB_43466| Best HMM Match : DEAD (HMM E-Value=1.8)
          Length = 210

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 94  YFEFIADSAYVPSLWSGSTCSPGDPLV 14
           Y E++ +S       S ++CSPGDPLV
Sbjct: 71  YVEYLHESVPKSEPLSSNSCSPGDPLV 97


>SB_57286| Best HMM Match : zf-C2H2 (HMM E-Value=8.1)
          Length = 234

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 27/107 (25%), Positives = 47/107 (43%), Gaps = 14/107 (13%)
 Frame = +1

Query: 376 PEHDVLSIAEKMEIGIRRRA-----RGNWWYGRDEPQ---------LAVQLYRRALDILD 513
           P H++ S+A K+EI + R A      G W   R + Q          AV+    A+ +L 
Sbjct: 119 PGHEIFSLANKLEIAMYRLAGIHHFEGAWMLQRQQQQKFLSFHHMDTAVEYLTTAITVLK 178

Query: 514 ESEGGITDPTPSGELTFANQALKELLDERLRVHNNMAAAQLKAGAYE 654
           E +  + +P       +  Q + E +++  ++   +A AQ K  A E
Sbjct: 179 EVKENVREPLHE---IYNEQVVNEWIND--KIDEKLAYAQDKLKAME 220


>SB_42515| Best HMM Match : TPR_2 (HMM E-Value=2e-14)
          Length = 1104

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +1

Query: 598 RLRVHNNMAAAQLKAGAYEAALQAVTRVLSCQPKNAKALYRKSRILSAM 744
           RLR  N+ +   +     + A +     L  QP N KALYR++    A+
Sbjct: 749 RLRRKNSSSYGSIPPSENDLAEKDANTALGLQPDNVKALYRRALARKAL 797


>SB_37066| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 11/15 (73%), Positives = 14/15 (93%), Gaps = 1/15 (6%)
 Frame = -2

Query: 55  LWSGS-TCSPGDPLV 14
           +W+GS +CSPGDPLV
Sbjct: 77  IWAGSNSCSPGDPLV 91


>SB_32832| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 157

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 4/23 (17%)
 Frame = -2

Query: 70 AYVPSLW----SGSTCSPGDPLV 14
          A VP++W    + ++CSPGDPLV
Sbjct: 22 AVVPNIWCMRKTSNSCSPGDPLV 44


>SB_52926| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 89

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -2

Query: 52  WSGSTCSPGDPLV 14
           W+ ++CSPGDPLV
Sbjct: 62  WTSNSCSPGDPLV 74


>SB_39375| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 151

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 94 YFEFIADSAYVPSLWSGSTCSPGDPLV 14
          Y  F+ +     + +S ++CSPGDPLV
Sbjct: 12 YNAFLCNEDLARTCFSSNSCSPGDPLV 38


>SB_4710| Best HMM Match : Bowman-Birk_leg (HMM E-Value=0.78)
          Length = 158

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 577 LKELLDERLRVHNNMAAAQLKAGAYEAALQAVTRVLSCQPK 699
           L +L++ RL +  +    Q++AG Y   L   T+V+   PK
Sbjct: 37  LNQLMELRLTLKRDKNLLQVEAGVYSCFLGTCTKVIPLMPK 77


>SB_40885| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -2

Query: 52 WSGSTCSPGDPLV 14
          W  ++CSPGDPLV
Sbjct: 16 WGSNSCSPGDPLV 28


>SB_17505| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 144

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -2

Query: 52 WSGSTCSPGDPLV 14
          W  ++CSPGDPLV
Sbjct: 19 WESNSCSPGDPLV 31


>SB_27816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -2

Query: 61  PSLWSGSTCSPGDPLV 14
           PS+ + ++CSPGDPLV
Sbjct: 87  PSVSTSNSCSPGDPLV 102


>SB_6274| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 127

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -2

Query: 52 WSGSTCSPGDPLV 14
          W  ++CSPGDPLV
Sbjct: 2  WPSNSCSPGDPLV 14


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,828,901
Number of Sequences: 59808
Number of extensions: 510038
Number of successful extensions: 2821
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 2743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2819
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)