Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0165
(645 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 120 2e-28
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 56 3e-09
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 56 6e-09
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 55 1e-08
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 52 9e-08
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 49 7e-07
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 48 1e-06
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 46 5e-06
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 45 1e-05
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 44 2e-05
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 44 2e-05
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 43 4e-05
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 41 2e-04
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 40 3e-04
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 38 0.002
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 37 0.002
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 37 0.002
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 37 0.003
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 36 0.004
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 36 0.004
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 35 0.012
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 34 0.015
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 34 0.020
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 33 0.047
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 33 0.047
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 32 0.062
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 30 0.33
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 30 0.33
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 29 0.57
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 29 0.57
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 27 1.8
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 27 1.8
SPBC651.03c |gyp10||GTPase activating protein Gyp10|Schizosaccha... 27 3.1
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 26 4.0
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 26 5.3
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub... 26 5.3
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 25 7.1
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 25 7.1
SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|ch... 25 9.3
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 120 bits (288), Expect = 2e-28
Identities = 52/123 (42%), Positives = 86/123 (69%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 453
K+FIGGL++ TTD SL++++EQ+GE++D VM+D T RS+GFGF+T+ V+E +
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVM-S 222
Query: 454 RPHKIDGRIVEPKRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSV 633
+ H +DG+I++PKRA+PREE ++ K+FV G+ D EE+ R +F+ FG ++
Sbjct: 223 KEHHLDGKIIDPKRAIPREEQEK------TAKMFVGGVPGDCTEEEFRNFFNQFGRVLDA 276
Query: 634 SVV 642
+++
Sbjct: 277 TLM 279
Score = 73.3 bits (172), Expect = 3e-14
Identities = 35/90 (38%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Frame = +1
Query: 253 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHM 432
EE E T K+F+GG+ T+ + F+ Q+G ++D +M D T R +GFGF+TY
Sbjct: 241 EEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESA 300
Query: 433 VDEAQNNRPH-KIDGRIVEPKRAVPREEIK 519
V EA ++P+ I G+ VE KRA P+ ++
Sbjct: 301 V-EATMSQPYITIHGKPVEVKRATPKASLR 329
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 56.4 bits (130), Expect = 3e-09
Identities = 41/152 (26%), Positives = 70/152 (46%), Gaps = 12/152 (7%)
Frame = +1
Query: 226 KPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFG 405
+P++ ++ T +F+G L + D L + +E++G IV V+ D ++ RSKG+G
Sbjct: 248 RPAKITKPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYG 307
Query: 406 FITYSQAHMVDEA-QNNRPHKIDGRIVEPKRAVPREEIKRPEA-----------SATVKK 549
++ + A N +IDGR+V + PR +P A S
Sbjct: 308 YVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDT 367
Query: 550 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVVT 645
+FV L + E+DL F G+I S+ + T
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPT 399
Score = 51.6 bits (118), Expect = 9e-08
Identities = 27/89 (30%), Positives = 42/89 (47%)
Frame = +1
Query: 241 GDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYS 420
GD EP T +F+G L + T+ L + G+I + + DP++ R KGFG++T+S
Sbjct: 358 GDQLSEPSDT--VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFS 415
Query: 421 QAHMVDEAQNNRPHKIDGRIVEPKRAVPR 507
+ H I GR + PR
Sbjct: 416 DIDSAKKCVEMNGHFIAGRPCRLDFSTPR 444
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 55.6 bits (128), Expect = 6e-09
Identities = 37/135 (27%), Positives = 64/135 (47%), Gaps = 12/135 (8%)
Frame = +1
Query: 277 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN- 453
LF+ L ++T L F+ G I VV+ +P+T ++G+GF+T+S A
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 454 RPHKIDGRIVEPKRAVPRE--EIKRPEASATVK--------KLFVAGLKQDIEE-EDLRE 600
+ K+ GRI+ A PR+ E+ + A K +L + L I++ + L
Sbjct: 67 KNKKLHGRILRLDFATPRKRSEVDTDQNKAVKKTIRQDNRPRLIIRNLPWSIKKPQHLEP 126
Query: 601 YFSTFGNIVSVSVVT 645
+FS FG + + + T
Sbjct: 127 HFSKFGKVREIKIPT 141
Score = 36.3 bits (80), Expect = 0.004
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +1
Query: 277 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 417
+F+ L + T+ L + Q+G + ++KDP T RS G GFI +
Sbjct: 279 VFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKF 325
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 54.8 bits (126), Expect = 1e-08
Identities = 36/136 (26%), Positives = 67/136 (49%), Gaps = 13/136 (9%)
Frame = +1
Query: 277 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ--- 447
++I LD T+ + + Q+GEI + ++KD K +GFGF+ Y+ +A
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDK-PRGFGFVNYANHECAQKAVDEL 321
Query: 448 NNRPHKIDGRIV--EPKRAVPREEIKRPEASATVKK--------LFVAGLKQDIEEEDLR 597
N++ +K V K+ EE+++ ++K LF+ L+ ++++E L+
Sbjct: 322 NDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLK 381
Query: 598 EYFSTFGNIVSVSVVT 645
FS FG I S ++T
Sbjct: 382 AEFSAFGTITSAKIMT 397
Score = 46.0 bits (104), Expect = 5e-06
Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 1/122 (0%)
Frame = +1
Query: 277 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNR 456
L++G LD T++ L E + G + + V +D T+RS G+ ++ + ++A +
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141
Query: 457 PHK-IDGRIVEPKRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSV 633
+ I GR P R + + T +F+ L I+ + L + FS FG I+S
Sbjct: 142 NYTLIKGR---PCRIMWSQRDPSLRKMGT-GNVFIKNLDPAIDNKALHDTFSAFGKILSC 197
Query: 634 SV 639
V
Sbjct: 198 KV 199
Score = 39.5 bits (88), Expect = 4e-04
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 1/102 (0%)
Frame = +1
Query: 277 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNR 456
LFI L D LK + +G I +M D + K SKGFGF+ Y+ ++A
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGK-SKGFGFVCYTTPEEANKAVTEM 424
Query: 457 PHK-IDGRIVEPKRAVPREEIKRPEASATVKKLFVAGLKQDI 579
+ + G+ + A R+E++R + A ++ L+Q +
Sbjct: 425 NQRMLAGKPLYVALA-QRKEVRRSQLEAQIQARNQFRLQQQV 465
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 51.6 bits (118), Expect = 9e-08
Identities = 22/75 (29%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Frame = +1
Query: 277 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN- 453
LF+ G+ R + L++ + ++G + V +M++P TK S+GFGF+++S A +N
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNL 162
Query: 454 RPHKIDGRIVEPKRA 498
+ GR++ ++A
Sbjct: 163 NSQEFYGRVLNVQKA 177
Score = 33.9 bits (74), Expect = 0.020
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +1
Query: 505 REEIKRPEASATV-KKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVV 642
+E PE S + LFV+G+ ++E++L++ FS FG + V ++
Sbjct: 87 KEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIM 133
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 48.8 bits (111), Expect = 7e-07
Identities = 22/47 (46%), Positives = 31/47 (65%)
Frame = +1
Query: 277 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 417
LF+G LD+ TTD+ LKE + Q G+I V +M T + KGFGF+ +
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDF 276
Score = 29.1 bits (62), Expect = 0.57
Identities = 35/147 (23%), Positives = 60/147 (40%), Gaps = 20/147 (13%)
Frame = +1
Query: 265 HTRKLFIGGLDYRTTDSSLKEFYEQ-----WGEIVDVVVMKDPKTKR--SKGFGFITYSQ 423
HT K + R T +KE E+ E + + M K KR +KGF ++ ++
Sbjct: 115 HTTKEILTDFFVRETSEMIKEVSEENIKPITTEQITRIHMPMSKEKRFQNKGFAYVDFAT 174
Query: 424 AHMVDEAQNNRPHKIDGRIVEPKR--------AVPREEIKRPEASATVKK-----LFVAG 564
+ A ++GR + K + P + + + + KK LFV
Sbjct: 175 EDALKLALQCSEKALNGRNILIKSNTDFSGRPSKPANTLSKTASIQSSKKEPSSILFVGN 234
Query: 565 LKQDIEEEDLREYFSTFGNIVSVSVVT 645
L + + DL+E+F G I V ++T
Sbjct: 235 LDFETTDADLKEHFGQVGQIRRVRLMT 261
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 48.0 bits (109), Expect = 1e-06
Identities = 36/143 (25%), Positives = 65/143 (45%), Gaps = 10/143 (6%)
Frame = +1
Query: 226 KPSESGDDYEEPEHTRK-LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGF 402
+P E E E R+ +F+ L R T L +F+EQ G + D +++D + RSKG
Sbjct: 224 RPRERSSKLSEEERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGV 283
Query: 403 GFITYSQAHMVDEAQNNRPHKIDGRIV--------EPKRAVPREEIKR-PEASATVKKLF 555
++ + V A ++ G V + ++A E+ R A +L
Sbjct: 284 AYVEFCHEDSVQAAIALSGKRLLGLPVIVQLTEAEKNRKAREAAELARAASAEIPFHRLC 343
Query: 556 VAGLKQDIEEEDLREYFSTFGNI 624
V+ + ++ +ED++ F FG+I
Sbjct: 344 VSNIHFNLTDEDVKAIFEPFGDI 366
Score = 38.7 bits (86), Expect = 7e-04
Identities = 20/55 (36%), Positives = 32/55 (58%)
Frame = +1
Query: 253 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 417
E P H +L + + + TD +K +E +G+I V + +D + RSKGFG+I Y
Sbjct: 336 EIPFH--RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQN-RSKGFGYIQY 387
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 46.0 bits (104), Expect = 5e-06
Identities = 35/131 (26%), Positives = 56/131 (42%), Gaps = 1/131 (0%)
Frame = +1
Query: 253 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHM 432
E+ +++G LD + TDS L E Q G +V++ + +D GFGF +
Sbjct: 5 EDRNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQD 64
Query: 433 VDEA-QNNRPHKIDGRIVEPKRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFS 609
V+ A Q K+ G+ + RA + + LFV L ++E L + FS
Sbjct: 65 VEYACQILNQVKLFGKPIRVNRASQDRGVN----TLIGANLFVGNLDPLVDERVLYDTFS 120
Query: 610 TFGNIVSVSVV 642
G +V V
Sbjct: 121 ALGQLVKAPQV 131
Score = 38.3 bits (85), Expect = 0.001
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = +1
Query: 277 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD---EAQ 447
LF+G LD + L + + G++V + + RSKG+GF++Y D EA
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAM 160
Query: 448 NNR 456
NN+
Sbjct: 161 NNQ 163
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 44.8 bits (101), Expect = 1e-05
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Frame = +1
Query: 259 PEHTRK-LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMV 435
P+ T++ +F+G L + + L ++ G I V +++DPKT KGF +I + V
Sbjct: 265 PQDTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGV 324
Query: 436 DEAQNNRPHKI-DGRIVEPKRA 498
D+A K+ +GR + RA
Sbjct: 325 DKALLLNEKKMPEGRTLRIMRA 346
Score = 29.1 bits (62), Expect = 0.57
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 508 EEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVV 642
+ + P T + +FV L + EEE L YF G+I V +V
Sbjct: 258 DSVSHPMPQDTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIV 302
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 44.0 bits (99), Expect = 2e-05
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Frame = +1
Query: 226 KPSESG--DDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKG 399
KP S DY + + ++IG LD+ + + + ++GE VD+ +++D +T +SKG
Sbjct: 17 KPFSSSWHQDYSDSAY---IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKG 73
Query: 400 FGFITYSQAHMVDEAQNNRPH-KIDGRIV 483
F F+ Y A +N + K+ R+V
Sbjct: 74 FAFLKYEDQRSTVLAVDNMTNVKLLDRLV 102
Score = 26.2 bits (55), Expect = 4.0
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +1
Query: 550 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVV 642
+++ L D+ E+D+ FS FG V +++V
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLV 63
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 44.0 bits (99), Expect = 2e-05
Identities = 25/84 (29%), Positives = 42/84 (50%)
Frame = +1
Query: 283 IGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPH 462
+G L + T++ L +F+ + + +V+ DP T+RS+GFG++ + A + A
Sbjct: 98 VGNLSFDLTENDLGDFFGEGVTSIRLVI--DPLTERSRGFGYVEFETADTLSAALALSGE 155
Query: 463 KIDGRIVEPKRAVPREEIKRPEAS 534
+ GR V A PR R E S
Sbjct: 156 DLMGRPVRITVAEPRRSFAREERS 179
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 42.7 bits (96), Expect = 4e-05
Identities = 17/89 (19%), Positives = 47/89 (52%)
Frame = +1
Query: 271 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 450
R+L++ +D++ + ++ F+ +G++ V + K + + KGFG++ + + A +
Sbjct: 757 RELYVTNIDFKVNEKDVETFFRDYGQVESVRIPK--RFNQHKGFGYVVMTTNQDAENALS 814
Query: 451 NRPHKIDGRIVEPKRAVPREEIKRPEASA 537
++ R++ + PRE +++ S+
Sbjct: 815 AAGKQLGNRVLNVVLSKPRESLEKTRVSS 843
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 40.7 bits (91), Expect = 2e-04
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Frame = +1
Query: 235 ESGDDY--EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGF 408
ESGD E + + L + L T + L++ + ++G I V + KD +T R+KGF F
Sbjct: 188 ESGDSMFKRERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAF 247
Query: 409 ITY 417
++Y
Sbjct: 248 VSY 250
Score = 27.1 bits (57), Expect = 2.3
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +1
Query: 550 LFVAGLKQDIEEEDLREYFSTFGNIVSV 633
L V L D EE+LR+ F FG I V
Sbjct: 204 LRVTNLSDDTREEELRDLFRRFGGIQRV 231
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 39.9 bits (89), Expect = 3e-04
Identities = 17/64 (26%), Positives = 32/64 (50%)
Frame = +1
Query: 253 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHM 432
+E + +++G +DY T L+ + G + V ++ D T KGF +I +S+ +
Sbjct: 49 KESIDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSL 108
Query: 433 VDEA 444
V A
Sbjct: 109 VPNA 112
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 37.5 bits (83), Expect = 0.002
Identities = 33/126 (26%), Positives = 55/126 (43%), Gaps = 11/126 (8%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 453
+LF+G + + T + +F++ +G+I+D +M GFGF+ A + N+
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQILDCKLM--------NGFGFVEVEDARDARDIVND 56
Query: 454 RPHK--IDGRI-VEPKRAVPREE--------IKRPEASATVKKLFVAGLKQDIEEEDLRE 600
K + RI VEP R R K P T +L V L +D+ +DL++
Sbjct: 57 FQGKEFMGSRIVVEPARGERRRRENFRESAASKYPRPRRTGFRLIVENLSEDVSWQDLKD 116
Query: 601 YFSTFG 618
G
Sbjct: 117 VMRKAG 122
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 37.1 bits (82), Expect = 0.002
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Frame = +1
Query: 238 SGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 417
+G Y + E R++++G L Y+ LKEF Q G +++ ++ P SKG I Y
Sbjct: 57 NGQKYTQQE--RRVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLP-NGLSKGCAIIEY 113
Query: 418 SQAHMVDEA-QNNRPHKIDGRIV 483
S A A + K GR+V
Sbjct: 114 STAEEARTAIKTLSNQKFMGRLV 136
Score = 35.1 bits (77), Expect = 0.009
Identities = 14/47 (29%), Positives = 28/47 (59%)
Frame = +1
Query: 277 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 417
+++G L + T+D +L + + G ++ + +P T RSKGFG + +
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQF 327
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 37.1 bits (82), Expect = 0.002
Identities = 34/147 (23%), Positives = 59/147 (40%), Gaps = 26/147 (17%)
Frame = +1
Query: 277 LFIGGLDYRTTDSSLKE-FYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ--------AH 429
+F+G L + + F ++ +M DP+T S+G+GF+ ++ A
Sbjct: 188 IFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAE 247
Query: 430 MVDEAQNNRPHKID-------GRIVEPKRAVPRE-------EIKRPE---ASATVKKLFV 558
M + +RP ++ + P VP +P A +FV
Sbjct: 248 MQGQICGDRPIRVGLATPKSKAHVFSPVNVVPVSMPPVGFYSAAQPVPQFADTANSTVFV 307
Query: 559 AGLKQDIEEEDLREYFSTFGNIVSVSV 639
GL + + EE+L+ F FG IV V +
Sbjct: 308 GGLSKFVSEEELKYLFQNFGEIVYVKI 334
Score = 30.3 bits (65), Expect = 0.25
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +1
Query: 277 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 450
+F+GGL ++ LK ++ +GEIV V K KG GF+ + + A N
Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEIVYV------KIPPGKGCGFVQFVNRQSAEIAIN 356
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 36.7 bits (81), Expect = 0.003
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = +1
Query: 277 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 417
+F+G + Y ++ + E + Q G + ++ DP+T KG+GF +
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEF 55
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 36.3 bits (80), Expect = 0.004
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Frame = +1
Query: 277 LFIGGLDYRTTDSS--LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 450
LF+ LD ++ L+E + ++G I + P T+ SKG+GF+++S +A N
Sbjct: 421 LFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAIN 480
Query: 451 NRPHKIDGRIVEPKRAVPREEIKRPEASATVKKLF 555
++G + KR KR + + +F
Sbjct: 481 T----LNGVLFGKKRLFVNYAEKREDRKKRLSAIF 511
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 36.3 bits (80), Expect = 0.004
Identities = 17/67 (25%), Positives = 32/67 (47%)
Frame = +1
Query: 223 MKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGF 402
M + E TR ++I GL T+D +L + ++G++ + D +T KG+
Sbjct: 280 MSHDNKKSNMESTSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGY 339
Query: 403 GFITYSQ 423
GF + +
Sbjct: 340 GFACFEE 346
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 34.7 bits (76), Expect = 0.012
Identities = 18/83 (21%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Frame = +1
Query: 277 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ---AHMVDEAQ 447
L++G L + + ++ ++ Q+G ++ + + ++ KT SK + FI + A++V E
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVANVVAETM 166
Query: 448 NNRPHKIDGRIVEPKRAVPREEI 516
+N + + G++++ K +P +++
Sbjct: 167 HN--YLLYGKLLQCK-VIPEDQV 186
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 34.3 bits (75), Expect = 0.015
Identities = 13/59 (22%), Positives = 29/59 (49%)
Frame = +1
Query: 277 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 453
+++G + Y + + + ++Q G + ++ DP++ + KG+GF Y A N
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRN 65
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 33.9 bits (74), Expect = 0.020
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +1
Query: 277 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQNN 453
+++G L + TT+ + + + GEI +++ D TK GF F+ Y +D +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSLKYI 93
Query: 454 RPHKIDGRIV 483
+D RI+
Sbjct: 94 SRTSLDERII 103
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 32.7 bits (71), Expect = 0.047
Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Frame = +1
Query: 277 LFIGGLDYRTTDSSL----KEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 444
LF+ L+ ++ L K++++QWG ++ V V+KD + + F+ + +A
Sbjct: 81 LFVASLNSSRSEEELTATVKDYFQQWGPLLHVKVLKD---WLQRPYSFVQFQNTDDASKA 137
Query: 445 QNNRPHKI-DGRIVEPKRAVPREEIK 519
+ + I DGR + +RA I+
Sbjct: 138 LSEAQNTILDGRHIRIERAKVNRTIR 163
Score = 26.6 bits (56), Expect = 3.1
Identities = 20/98 (20%), Positives = 39/98 (39%), Gaps = 1/98 (1%)
Frame = +1
Query: 223 MKPSESGDDYEEPEHTRKLFIGGLD-YRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKG 399
M PS P +F+G LD T L + + ++G+++D ++ K
Sbjct: 349 MNPSMMFAAMPPPIDPYSIFVGQLDPVNCTHYLLVDLFSKYGKVIDCKIIHQSKKPAFAF 408
Query: 400 FGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREE 513
F + A+ + PH+ VE ++ P ++
Sbjct: 409 LRFDSQQAAYAAVCGKTRSPHQKKPLRVEFRQLRPMQQ 446
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 32.7 bits (71), Expect = 0.047
Identities = 35/152 (23%), Positives = 65/152 (42%), Gaps = 24/152 (15%)
Frame = +1
Query: 256 EPEHTRKLFIGGLDYRTTDSSL-KEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYS---- 420
+PE + +F+G L T DS L F + ++ DP T S+ +GF+ +S
Sbjct: 179 DPEFS--IFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKE 236
Query: 421 QAHMVDEAQN----NRPHKIDGRIVEPKRAVPREEIKRPEASATVKK------------- 549
Q H + Q RP +I + + ++ + ++T +
Sbjct: 237 QQHALMHMQGYLCQGRPLRISVASPKSRASIAADSALGIVPTSTSNRQPNQDLCSMDPLN 296
Query: 550 --LFVAGLKQDIEEEDLREYFSTFGNIVSVSV 639
+FV GL ++ E+DL+ F FG I+++ +
Sbjct: 297 TTVFVGGLASNLSEKDLQVCFQPFGRILNIKI 328
Score = 31.1 bits (67), Expect = 0.14
Identities = 16/58 (27%), Positives = 31/58 (53%)
Frame = +1
Query: 277 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 450
+F+GGL ++ L+ ++ +G I+++ K KG GF+ YS+ ++A N
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFGRILNI------KIPFGKGCGFVQYSEKSAAEKAIN 350
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 32.3 bits (70), Expect = 0.062
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Frame = +1
Query: 259 PEHTRKLFIGGLDYR--TTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHM 432
P L++ LD T S L++ + +G I+ ++ P + SKG+GF+ + Q
Sbjct: 378 PIDPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEA 437
Query: 433 VDEAQNNRPHKIDGRIVEPKR 495
A++ ++G +V KR
Sbjct: 438 AVRAKDT----LNGMMVGKKR 454
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 29.9 bits (64), Expect = 0.33
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 550 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVV 642
LFV L ++EDL FS FG I+S V+
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVI 276
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 29.9 bits (64), Expect = 0.33
Identities = 12/47 (25%), Positives = 27/47 (57%)
Frame = +1
Query: 277 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 417
LF+G L ++ +L+ +++ G++ V + D + R KG+ F+ +
Sbjct: 94 LFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEF 140
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 29.1 bits (62), Expect = 0.57
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +1
Query: 526 EASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVT 645
+ S + +F+ L I E+++RE FG I + +VT
Sbjct: 200 QQSGACRNVFLGNLPNGITEDEIREDLEPFGPIDQIKIVT 239
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 268 TRKLFIGGLDYRTTDSSLKEFYEQWGEI 351
+R ++IG D T LKE +E++GEI
Sbjct: 413 SRNIYIGNADDSLTIERLKEDFEEFGEI 440
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 29.1 bits (62), Expect = 0.57
Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 13/110 (11%)
Frame = +1
Query: 238 SGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEI-VDVVVMKDP-----------K 381
SG + +P +++ GL T+ LKE ++ + + V P +
Sbjct: 194 SGKNKAKPLPPNSIYVSGLSVTLTNEGLKEMFDAYNPTRARIAVRSLPPYIIRRIKLRGE 253
Query: 382 TKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRI-VEPKRAVPREEIKRPE 528
+R +GFGF++++ A A K G + + K AV RE+ + E
Sbjct: 254 QRRGRGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSAVFREDKQNDE 303
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +1
Query: 508 EEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSV 633
E+ + + + K+LF+ L E+DL+ F FG + V
Sbjct: 311 EQERNIQLISETKRLFLRNLTYSCAEDDLKSLFGPFGQLEQV 352
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 27.5 bits (58), Expect = 1.8
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Frame = +1
Query: 271 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 450
R L++ G L +E +G ++ + P+T+ S+ F F+ Y + ++A
Sbjct: 7 RTLYVTGFRDGMRARELAYEFEPFGPLIRCDI-PIPRTRTSRPFAFVEYEDSRDAEDAY- 64
Query: 451 NRPHKIDGRIVEPKRAVPREE-IKRPEASATVKK 549
+++ GR +E V R E K+P S K
Sbjct: 65 ---YEVHGRRLERGGGVLRVEWAKQPPPSGPGSK 95
>SPBC651.03c |gyp10||GTPase activating protein
Gyp10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 373
Score = 26.6 bits (56), Expect = 3.1
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = -1
Query: 150 LSLCFCSIKYSVSFLSLITSTFQVADASSVHASCR--FLQPGGSTSLERRHR 1
+SLC S ++ + LS TS AD + VH F Q + L R+HR
Sbjct: 46 VSLCGLSCRHRMECLSRSTSQSSYADQNQVHLDSERSFFQYKLNPFLLRKHR 97
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 26.2 bits (55), Expect = 4.0
Identities = 8/34 (23%), Positives = 21/34 (61%)
Frame = +1
Query: 265 HTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVV 366
++R LF+GG+ + L+ +E++G + +++
Sbjct: 404 YSRTLFLGGITRSVREPVLRSMFERFGSVQSLIL 437
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 25.8 bits (54), Expect = 5.3
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +1
Query: 418 SQAHMVDEAQNNRPHKIDGRIVEPKRAVPREEIKRPEASATVKKLFVAGLK 570
S H+V A NRP +D ++ P R + I RP+ +++F LK
Sbjct: 432 SSEHIVVFAGTNRPDVLDPALLRPGRFDRQITIDRPDIGGR-EQIFKVHLK 481
>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 838
Score = 25.8 bits (54), Expect = 5.3
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +1
Query: 229 PSESGDDYEEPEHTRKLFI 285
PS G YEEPEHTR +I
Sbjct: 76 PSADGG-YEEPEHTRLSYI 93
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 25.4 bits (53), Expect = 7.1
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = -1
Query: 552 QLFNGGTSFWSFNLFPWNCSFWLDNSSVNFVRPIILSFINHMGLRICNK 406
QL SF +F +F + L S N++ + +FI+H+ R+ N+
Sbjct: 1246 QLTPTSKSFQNFLIFAGVIYYLLAASGQNYIFISMTNFISHLNNRLLNR 1294
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 550 LFVAGLKQDIEEEDLREYFSTFGNIVSVSV 639
++V L ++I ++LR YF FG I+ V
Sbjct: 178 VYVHQLPENITTQELRSYFLHFGEILYTQV 207
>SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 445
Score = 25.0 bits (52), Expect = 9.3
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 235 ESGDDYEEPEHTRKLFIGGLDYRTTDSSLKE 327
+ GD + R LF YRT DSS+K+
Sbjct: 353 QQGDSFPSLPEIRALFKDCKFYRTIDSSIKD 383
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,492,970
Number of Sequences: 5004
Number of extensions: 48678
Number of successful extensions: 205
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -