Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0165
(645 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 100 2e-21
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 100 2e-21
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 97 7e-21
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 97 7e-21
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 96 2e-20
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 96 2e-20
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 95 4e-20
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 95 4e-20
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 95 4e-20
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 95 4e-20
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 94 8e-20
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 90 1e-18
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 87 7e-18
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 87 9e-18
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 87 9e-18
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 84 9e-17
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 83 2e-16
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 73 2e-13
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 72 4e-13
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 70 1e-12
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 69 3e-12
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 67 8e-12
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 67 8e-12
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 64 6e-11
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 64 8e-11
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 64 8e-11
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 63 1e-10
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 63 1e-10
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 63 2e-10
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 63 2e-10
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 63 2e-10
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 63 2e-10
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 62 2e-10
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 62 2e-10
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 62 3e-10
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 62 3e-10
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 62 4e-10
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 62 4e-10
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 61 5e-10
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 61 5e-10
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 61 5e-10
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 61 7e-10
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 61 7e-10
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 61 7e-10
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 60 2e-09
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 60 2e-09
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 60 2e-09
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 60 2e-09
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 60 2e-09
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 59 2e-09
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 59 3e-09
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 59 3e-09
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 58 4e-09
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 58 4e-09
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 58 4e-09
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 58 4e-09
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 58 5e-09
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 58 5e-09
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 58 7e-09
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 58 7e-09
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 58 7e-09
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 58 7e-09
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 58 7e-09
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 57 9e-09
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 56 2e-08
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 56 3e-08
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 55 4e-08
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 54 6e-08
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 54 6e-08
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 54 8e-08
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 54 1e-07
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 53 2e-07
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 53 2e-07
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 53 2e-07
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 53 2e-07
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 53 2e-07
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 53 2e-07
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 52 2e-07
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 52 2e-07
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 52 2e-07
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 52 3e-07
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 52 4e-07
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 51 6e-07
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 51 8e-07
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 50 1e-06
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 50 2e-06
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 50 2e-06
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 50 2e-06
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 49 2e-06
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 49 2e-06
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 49 2e-06
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 49 3e-06
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 48 4e-06
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 48 4e-06
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 48 4e-06
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 48 4e-06
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 48 7e-06
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 48 7e-06
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 48 7e-06
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 48 7e-06
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 47 9e-06
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 47 9e-06
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 47 9e-06
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 47 9e-06
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 47 9e-06
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 47 1e-05
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 47 1e-05
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 47 1e-05
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 47 1e-05
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 46 2e-05
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 46 2e-05
At5g51300.2 68418.m06360 splicing factor-related contains simila... 46 3e-05
At5g51300.1 68418.m06359 splicing factor-related contains simila... 46 3e-05
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 46 3e-05
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 46 3e-05
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 46 3e-05
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 45 4e-05
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 45 5e-05
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 45 5e-05
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 45 5e-05
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 45 5e-05
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 44 7e-05
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 44 7e-05
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 44 9e-05
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 44 9e-05
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 44 9e-05
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 44 1e-04
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 44 1e-04
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 43 2e-04
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 43 2e-04
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 43 2e-04
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 43 2e-04
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 43 2e-04
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 42 3e-04
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 42 4e-04
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 42 4e-04
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 42 4e-04
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 41 6e-04
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 41 8e-04
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 41 8e-04
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 41 8e-04
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 40 0.001
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 40 0.002
At1g45100.1 68414.m05170 polyadenylate-binding protein, putative... 39 0.002
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 39 0.003
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 39 0.003
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 39 0.003
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 38 0.004
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 38 0.006
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 38 0.006
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 38 0.008
At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing ... 38 0.008
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 37 0.010
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 37 0.010
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 37 0.010
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 37 0.010
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 36 0.017
At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ... 36 0.017
At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ... 36 0.017
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 36 0.023
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 36 0.023
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 36 0.030
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 36 0.030
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 35 0.040
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 35 0.040
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 35 0.040
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 35 0.040
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 35 0.053
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 34 0.070
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 34 0.093
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 33 0.12
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 33 0.16
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 33 0.16
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 33 0.16
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 32 0.28
At2g47310.1 68415.m05906 flowering time control protein-related ... 32 0.28
At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing ... 32 0.28
At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing ... 32 0.28
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ... 32 0.28
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 32 0.28
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 32 0.37
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 32 0.37
At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B, pu... 31 0.50
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 31 0.50
At2g39090.1 68415.m04803 tetratricopeptide repeat (TPR)-containi... 31 0.65
At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing ... 31 0.65
At5g46250.2 68418.m05694 RNA recognition motif (RRM)-containing ... 31 0.87
At5g46250.1 68418.m05693 RNA recognition motif (RRM)-containing ... 31 0.87
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p... 31 0.87
At5g09830.1 68418.m01137 BolA-like family protein contains Pfam ... 30 1.1
At1g53650.1 68414.m06105 RNA-binding protein, putative similar t... 30 1.1
At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) famil... 30 1.5
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 29 2.0
At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-... 29 2.0
At4g11130.1 68417.m01805 RNA-dependent RNA polymerase, putative ... 29 2.0
At3g50670.2 68416.m05543 U1 small nuclear ribonucleoprotein 70 (... 29 2.0
At3g10845.1 68416.m01306 RNA recognition motif (RRM)-containing ... 29 2.0
At5g13655.1 68418.m01588 hypothetical protein 29 2.6
At3g14450.1 68416.m01831 RNA-binding protein, putative contains ... 29 2.6
At1g41855.1 68414.m04833 hypothetical protein 29 2.6
At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein ... 29 3.5
At1g32790.1 68414.m04042 RNA-binding protein, putative similar t... 29 3.5
At5g66010.1 68418.m08312 heterogeneous nuclear ribonucleoprotein... 28 4.6
At5g60170.1 68418.m07543 RNA recognition motif (RRM)-containing ... 28 6.1
At5g19030.3 68418.m02263 RNA recognition motif (RRM)-containing ... 28 6.1
At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing ... 28 6.1
At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing ... 28 6.1
At3g58480.1 68416.m06518 calmodulin-binding family protein conta... 28 6.1
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 28 6.1
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 28 6.1
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 28 6.1
At3g53290.1 68416.m05876 cytochrome P450, putative Similar to Cy... 27 8.1
At1g78810.2 68414.m09186 expressed protein 27 8.1
At1g78810.1 68414.m09185 expressed protein 27 8.1
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 27 8.1
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 99.5 bits (237), Expect = 2e-21
Identities = 50/135 (37%), Positives = 78/135 (57%), Gaps = 12/135 (8%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 453
KLFIGG+ + T + LKE++ +GE+++ V++KD T R++GFGF+ ++ V E
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADP-AVAEIVIT 65
Query: 454 RPHKIDGRIVEPKRAVPREE---IKRPEASA---------TVKKLFVAGLKQDIEEEDLR 597
H IDGR+VE K+AVPR++ + R +S+ +K+FV GL + E D +
Sbjct: 66 EKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFK 125
Query: 598 EYFSTFGNIVSVSVV 642
YF FG V V+
Sbjct: 126 TYFEQFGTTTDVVVM 140
Score = 89.8 bits (213), Expect = 1e-18
Identities = 42/92 (45%), Positives = 58/92 (63%)
Frame = +1
Query: 259 PEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD 438
P TRK+F+GGL T+S K ++EQ+G DVVVM D T+R +GFGFITY V+
Sbjct: 104 PGRTRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVE 163
Query: 439 EAQNNRPHKIDGRIVEPKRAVPREEIKRPEAS 534
+ H+++G++VE KRAVP+E P S
Sbjct: 164 KVLLKTFHELNGKMVEVKRAVPKELSPGPSRS 195
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 99.5 bits (237), Expect = 2e-21
Identities = 50/135 (37%), Positives = 78/135 (57%), Gaps = 12/135 (8%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 453
KLFIGG+ + T + LKE++ +GE+++ V++KD T R++GFGF+ ++ V E
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADP-AVAEIVIT 65
Query: 454 RPHKIDGRIVEPKRAVPREE---IKRPEASA---------TVKKLFVAGLKQDIEEEDLR 597
H IDGR+VE K+AVPR++ + R +S+ +K+FV GL + E D +
Sbjct: 66 EKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFK 125
Query: 598 EYFSTFGNIVSVSVV 642
YF FG V V+
Sbjct: 126 TYFEQFGTTTDVVVM 140
Score = 89.8 bits (213), Expect = 1e-18
Identities = 42/92 (45%), Positives = 58/92 (63%)
Frame = +1
Query: 259 PEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD 438
P TRK+F+GGL T+S K ++EQ+G DVVVM D T+R +GFGFITY V+
Sbjct: 104 PGRTRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVE 163
Query: 439 EAQNNRPHKIDGRIVEPKRAVPREEIKRPEAS 534
+ H+++G++VE KRAVP+E P S
Sbjct: 164 KVLLKTFHELNGKMVEVKRAVPKELSPGPSRS 195
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 97.5 bits (232), Expect = 7e-21
Identities = 46/133 (34%), Positives = 82/133 (61%), Gaps = 10/133 (7%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 453
KLFIGG+ + T++ L++++ +GE+++ V+MKD T R++GFGF+ ++ ++ +
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66
Query: 454 RPHKIDGRIVEPKRAVPREE----------IKRPEASATVKKLFVAGLKQDIEEEDLREY 603
+ H IDG+IVE K+AVPR++ ++ + KK+FV GL + E + ++Y
Sbjct: 67 K-HIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKY 125
Query: 604 FSTFGNIVSVSVV 642
F+ FG I V V+
Sbjct: 126 FAQFGMITDVVVM 138
Score = 83.8 bits (198), Expect = 9e-17
Identities = 35/84 (41%), Positives = 58/84 (69%)
Frame = +1
Query: 259 PEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD 438
P +++K+F+GGL T++ K+++ Q+G I DVVVM D +T+R +GFGFI+Y VD
Sbjct: 102 PSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVD 161
Query: 439 EAQNNRPHKIDGRIVEPKRAVPRE 510
+ H+++G++VE K AVP++
Sbjct: 162 KVLQKTFHELNGKMVEVKLAVPKD 185
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 97.5 bits (232), Expect = 7e-21
Identities = 46/133 (34%), Positives = 82/133 (61%), Gaps = 10/133 (7%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 453
KLFIGG+ + T++ L++++ +GE+++ V+MKD T R++GFGF+ ++ ++ +
Sbjct: 7 KLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66
Query: 454 RPHKIDGRIVEPKRAVPREE----------IKRPEASATVKKLFVAGLKQDIEEEDLREY 603
+ H IDG+IVE K+AVPR++ ++ + KK+FV GL + E + ++Y
Sbjct: 67 K-HIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKY 125
Query: 604 FSTFGNIVSVSVV 642
F+ FG I V V+
Sbjct: 126 FAQFGMITDVVVM 138
Score = 83.8 bits (198), Expect = 9e-17
Identities = 35/84 (41%), Positives = 58/84 (69%)
Frame = +1
Query: 259 PEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD 438
P +++K+F+GGL T++ K+++ Q+G I DVVVM D +T+R +GFGFI+Y VD
Sbjct: 102 PSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVD 161
Query: 439 EAQNNRPHKIDGRIVEPKRAVPRE 510
+ H+++G++VE K AVP++
Sbjct: 162 KVLQKTFHELNGKMVEVKLAVPKD 185
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 96.3 bits (229), Expect = 2e-20
Identities = 44/123 (35%), Positives = 76/123 (61%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 453
K+FIGGL TT++ + + ++GEI D V+M+D T + +GFGFIT++ +VD+ +
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79
Query: 454 RPHKIDGRIVEPKRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSV 633
H I+G+ VE KR +P+ KK+FV G+ + E++L+++F+ +GN+V
Sbjct: 80 -THVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEH 138
Query: 634 SVV 642
V+
Sbjct: 139 QVI 141
Score = 70.9 bits (166), Expect = 7e-13
Identities = 34/104 (32%), Positives = 62/104 (59%), Gaps = 2/104 (1%)
Frame = +1
Query: 229 PSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGF 408
P +G + + T+K+F+GG+ T+ LK+F+ ++G +V+ V++D +T RS+GFGF
Sbjct: 95 PKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGF 154
Query: 409 ITYSQAHMVDE--AQNNRPHKIDGRIVEPKRAVPREEIKRPEAS 534
+ + +VDE ++ N D + VE K+A P++ + R S
Sbjct: 155 VIFDSEEVVDELLSKGNMIDMADTQ-VEIKKAEPKKSLNRSPPS 197
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 96.3 bits (229), Expect = 2e-20
Identities = 44/123 (35%), Positives = 76/123 (61%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 453
K+FIGGL TT++ + + ++GEI D V+M+D T + +GFGFIT++ +VD+ +
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79
Query: 454 RPHKIDGRIVEPKRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSV 633
H I+G+ VE KR +P+ KK+FV G+ + E++L+++F+ +GN+V
Sbjct: 80 -THVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEH 138
Query: 634 SVV 642
V+
Sbjct: 139 QVI 141
Score = 64.9 bits (151), Expect = 4e-11
Identities = 25/71 (35%), Positives = 46/71 (64%)
Frame = +1
Query: 229 PSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGF 408
P +G + + T+K+F+GG+ T+ LK+F+ ++G +V+ V++D +T RS+GFGF
Sbjct: 95 PKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGF 154
Query: 409 ITYSQAHMVDE 441
+ + +VDE
Sbjct: 155 VIFDSEEVVDE 165
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 95.1 bits (226), Expect = 4e-20
Identities = 52/137 (37%), Positives = 78/137 (56%), Gaps = 14/137 (10%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 453
KLFIGG+ + T + L++++ +G++V+ V+M+D T R++GFGFI ++ V E
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADP-CVSERVIM 65
Query: 454 RPHKIDGRIVEPKRAVPREE---IKRPEA-----------SATVKKLFVAGLKQDIEEED 591
H IDGR VE K+AVPR++ +KR + KK+FV GL I EE+
Sbjct: 66 DKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEE 125
Query: 592 LREYFSTFGNIVSVSVV 642
+ YF FG I V V+
Sbjct: 126 FKNYFDQFGTIADVVVM 142
Score = 85.8 bits (203), Expect = 2e-17
Identities = 37/81 (45%), Positives = 55/81 (67%)
Frame = +1
Query: 268 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ 447
T+K+F+GGL T+ K +++Q+G I DVVVM D T+R +GFGFIT+ VD
Sbjct: 109 TKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVL 168
Query: 448 NNRPHKIDGRIVEPKRAVPRE 510
+ H+++G++VE KRAVP+E
Sbjct: 169 HKTFHELNGKLVEVKRAVPKE 189
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 95.1 bits (226), Expect = 4e-20
Identities = 52/137 (37%), Positives = 78/137 (56%), Gaps = 14/137 (10%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 453
KLFIGG+ + T + L++++ +G++V+ V+M+D T R++GFGFI ++ V E
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADP-CVSERVIM 65
Query: 454 RPHKIDGRIVEPKRAVPREE---IKRPEA-----------SATVKKLFVAGLKQDIEEED 591
H IDGR VE K+AVPR++ +KR + KK+FV GL I EE+
Sbjct: 66 DKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEE 125
Query: 592 LREYFSTFGNIVSVSVV 642
+ YF FG I V V+
Sbjct: 126 FKNYFDQFGTIADVVVM 142
Score = 85.8 bits (203), Expect = 2e-17
Identities = 37/81 (45%), Positives = 55/81 (67%)
Frame = +1
Query: 268 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ 447
T+K+F+GGL T+ K +++Q+G I DVVVM D T+R +GFGFIT+ VD
Sbjct: 109 TKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVL 168
Query: 448 NNRPHKIDGRIVEPKRAVPRE 510
+ H+++G++VE KRAVP+E
Sbjct: 169 HKTFHELNGKLVEVKRAVPKE 189
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 95.1 bits (226), Expect = 4e-20
Identities = 52/137 (37%), Positives = 78/137 (56%), Gaps = 14/137 (10%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 453
KLFIGG+ + T + L++++ +G++V+ V+M+D T R++GFGFI ++ V E
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADP-CVSERVIM 65
Query: 454 RPHKIDGRIVEPKRAVPREE---IKRPEA-----------SATVKKLFVAGLKQDIEEED 591
H IDGR VE K+AVPR++ +KR + KK+FV GL I EE+
Sbjct: 66 DKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEE 125
Query: 592 LREYFSTFGNIVSVSVV 642
+ YF FG I V V+
Sbjct: 126 FKNYFDQFGTIADVVVM 142
Score = 85.8 bits (203), Expect = 2e-17
Identities = 37/81 (45%), Positives = 55/81 (67%)
Frame = +1
Query: 268 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ 447
T+K+F+GGL T+ K +++Q+G I DVVVM D T+R +GFGFIT+ VD
Sbjct: 109 TKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVL 168
Query: 448 NNRPHKIDGRIVEPKRAVPRE 510
+ H+++G++VE KRAVP+E
Sbjct: 169 HKTFHELNGKLVEVKRAVPKE 189
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 95.1 bits (226), Expect = 4e-20
Identities = 52/143 (36%), Positives = 84/143 (58%), Gaps = 10/143 (6%)
Frame = +1
Query: 226 KPSES---GDDYEEP------EHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDP 378
KPSE DD +P + K+F+GGL TT + + + ++GEI D V+MKD
Sbjct: 18 KPSEDIEDDDDKSQPHSGGGVDSAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDR 77
Query: 379 KTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPKRAVPREEIKRPEASATVKKLF 555
KT + +GFGF+TY+ + +VD+ Q+N H I G+ VE KR +PR + + KK+F
Sbjct: 78 KTGQPRGFGFVTYADSSVVDKVIQDN--HIIIGKQVEIKRTIPRGSMSSNDFK--TKKIF 133
Query: 556 VAGLKQDIEEEDLREYFSTFGNI 624
V G+ +++++ +E+F FG +
Sbjct: 134 VGGIPSSVDDDEFKEFFMQFGEL 156
Score = 73.7 bits (173), Expect = 9e-14
Identities = 40/98 (40%), Positives = 58/98 (59%), Gaps = 2/98 (2%)
Frame = +1
Query: 268 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDE-- 441
T+K+F+GG+ D KEF+ Q+GE+ + +M+D T RS+GFGF+TY MVD
Sbjct: 129 TKKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLL 188
Query: 442 AQNNRPHKIDGRIVEPKRAVPREEIKRPEASATVKKLF 555
A+ NR ++ G VE K+A P K+P + T K F
Sbjct: 189 AKGNR-IELSGTQVEIKKAEP----KKPNSVTTPSKRF 221
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 93.9 bits (223), Expect = 8e-20
Identities = 56/157 (35%), Positives = 85/157 (54%), Gaps = 17/157 (10%)
Frame = +1
Query: 223 MKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGF 402
M P E E KLFIGG+ + T + L+E++ ++G++V+ V+M+D T R++GF
Sbjct: 1 MNPEEQ--KMESASDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGF 58
Query: 403 GFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREE---IKR---------PE-----A 531
GFI ++ + + ++ H IDGR VE K+AVPR++ +KR P
Sbjct: 59 GFIVFADPSVAERVIMDK-HIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGG 117
Query: 532 SATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVV 642
A KK+FV GL I E + + YF FG I V V+
Sbjct: 118 GARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVM 154
Score = 85.8 bits (203), Expect = 2e-17
Identities = 37/81 (45%), Positives = 56/81 (69%)
Frame = +1
Query: 268 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ 447
T+K+F+GGL T++ K +++Q+G I DVVVM D T+R +GFGFIT+ VD
Sbjct: 121 TKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVL 180
Query: 448 NNRPHKIDGRIVEPKRAVPRE 510
+ H+++G++VE KRAVP+E
Sbjct: 181 HKTFHELNGKMVEVKRAVPKE 201
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 90.2 bits (214), Expect = 1e-18
Identities = 44/124 (35%), Positives = 76/124 (61%), Gaps = 1/124 (0%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 453
KLF+GG+ + TT + ++ ++GE+VD V+M D T +GFGF+T++ + V E
Sbjct: 67 KLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADS-AVAEKVLE 125
Query: 454 RPHKIDGRIVEPKRAVPR-EEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVS 630
H ID R V+ KR +PR ++ +A + +K+FV GL +EE++L+ YF +G+I+
Sbjct: 126 EDHVIDDRKVDLKRTLPRGDKDTDIKAVSKTRKIFVGGLPPLLEEDELKNYFCVYGDIIE 185
Query: 631 VSVV 642
++
Sbjct: 186 HQIM 189
Score = 64.1 bits (149), Expect = 8e-11
Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Frame = +1
Query: 247 DYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQA 426
D + TRK+F+GGL + LK ++ +G+I++ +M D T RS+GFGF+T+
Sbjct: 149 DIKAVSKTRKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTE 208
Query: 427 HMVDEA-QNNRPHKIDGRIVEPKRAVPR 507
VD + + H++ + VE KRA P+
Sbjct: 209 DSVDRLFSDGKVHELGDKQVEIKRAEPK 236
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 547 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVT 645
KLFV G+ + E YF FG +V ++T
Sbjct: 67 KLFVGGVSWETTAETFANYFGKFGEVVDSVIMT 99
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 87.4 bits (207), Expect = 7e-18
Identities = 45/137 (32%), Positives = 74/137 (54%), Gaps = 14/137 (10%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 453
KLF+GG+ + T + L+E + +GE+ +VM+D T R +GFGF+ +S ++D
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQE 66
Query: 454 RPHKIDGRIVEPKRAVPREE--------------IKRPEASATVKKLFVAGLKQDIEEED 591
+ H ID R V+ KRA+ REE +A KK+FV GL + +E+
Sbjct: 67 K-HSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEE 125
Query: 592 LREYFSTFGNIVSVSVV 642
R+YF +G + V+++
Sbjct: 126 FRQYFEVYGPVTDVAIM 142
Score = 81.0 bits (191), Expect = 6e-16
Identities = 36/98 (36%), Positives = 57/98 (58%)
Frame = +1
Query: 217 LNMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSK 396
LN S GD Y + T+K+F+GGL TD ++++E +G + DV +M D T R +
Sbjct: 95 LNTSRSSGGDAYNK---TKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPR 151
Query: 397 GFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPRE 510
GFGF+++ VD + H + G+ VE KRA+P++
Sbjct: 152 GFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVKRALPKD 189
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 87.0 bits (206), Expect = 9e-18
Identities = 41/121 (33%), Positives = 69/121 (57%)
Frame = +1
Query: 271 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 450
RKL + G+ + LK++ ++G++ D +VMKD T RS+GFG++T++ A A
Sbjct: 3 RKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALK 62
Query: 451 NRPHKIDGRIVEPKRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVS 630
H + RI+E K A P+EE+++P T ++FVA + + E D R +F +G I
Sbjct: 63 GE-HFLGNRILEVKVATPKEEMRQPAKKVT--RIFVARIPSSVSESDFRSHFERYGEITD 119
Query: 631 V 633
+
Sbjct: 120 L 120
Score = 61.7 bits (143), Expect = 4e-10
Identities = 30/105 (28%), Positives = 58/105 (55%), Gaps = 1/105 (0%)
Frame = +1
Query: 214 ILNMKPSESGDDYEEP-EHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKR 390
IL +K + ++ +P + ++F+ + ++S + +E++GEI D+ + KD +K+
Sbjct: 71 ILEVKVATPKEEMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQ 130
Query: 391 SKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREEIKRP 525
+G GFIT+S A V++ + H + G V RA P+E+ P
Sbjct: 131 HRGIGFITFSSADSVEDLMED-THDLGGTTVAVDRATPKEDDHPP 174
Score = 57.2 bits (132), Expect = 9e-09
Identities = 29/89 (32%), Positives = 49/89 (55%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 453
K+F+G L + L++++ ++G I D + KDPK +GFGF+T+++ + D
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVA-R 299
Query: 454 RPHKIDGRIVEPKRAVPREEIKRPEASAT 540
R H+I G+ V A P +E P A A+
Sbjct: 300 RSHEICGQEVAIDSATPLDE-AGPSAGAS 327
Score = 32.7 bits (71), Expect = 0.21
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 523 PEASATVKKLFVAGLKQDIEEEDLREYFSTFGNI 624
P K+FV L Q+ +DLR+YF FG+I
Sbjct: 233 PTTRGIGNKIFVGRLPQEASVDDLRDYFGRFGHI 266
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 87.0 bits (206), Expect = 9e-18
Identities = 46/131 (35%), Positives = 73/131 (55%), Gaps = 14/131 (10%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 453
KLFIGG+ + T ++ L+E++ +GE++ V VM++ T R +GFGF+ +S ++D +
Sbjct: 7 KLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQD 66
Query: 454 RPHKIDGRIVEPKRAVPREEIKRPEASAT--------------VKKLFVAGLKQDIEEED 591
+ H ID R V+ KRA+ REE S T KK+FV GL + ++
Sbjct: 67 K-HHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPALTSDE 125
Query: 592 LREYFSTFGNI 624
R YF T+G +
Sbjct: 126 FRAYFETYGPV 136
Score = 70.5 bits (165), Expect = 9e-13
Identities = 29/81 (35%), Positives = 50/81 (61%)
Frame = +1
Query: 268 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ 447
T+K+F+GGL T + ++E +G + D V+M D T+R +GFGF+++ VD
Sbjct: 109 TKKIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVL 168
Query: 448 NNRPHKIDGRIVEPKRAVPRE 510
+ H ++G+ VE KRA+P++
Sbjct: 169 HKTFHDLNGKQVEVKRALPKD 189
Score = 39.9 bits (89), Expect = 0.001
Identities = 16/32 (50%), Positives = 23/32 (71%)
Frame = +1
Query: 547 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVV 642
KLF+ G+ D +E LREYFS FG ++ V+V+
Sbjct: 7 KLFIGGISWDTDENLLREYFSNFGEVLQVTVM 38
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 83.8 bits (198), Expect = 9e-17
Identities = 35/84 (41%), Positives = 58/84 (69%)
Frame = +1
Query: 259 PEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD 438
P +++K+F+GGL T++ K+++ Q+G I DVVVM D +T+R +GFGFI+Y VD
Sbjct: 29 PSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVD 88
Query: 439 EAQNNRPHKIDGRIVEPKRAVPRE 510
+ H+++G++VE K AVP++
Sbjct: 89 KVLQKTFHELNGKMVEVKLAVPKD 112
Score = 37.9 bits (84), Expect = 0.006
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 10/65 (15%)
Frame = +1
Query: 478 IVEPKRAVPREE----------IKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIV 627
+VE K+AVPR++ ++ + KK+FV GL + E + ++YF+ FG I
Sbjct: 1 MVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMIT 60
Query: 628 SVSVV 642
V V+
Sbjct: 61 DVVVM 65
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 83.0 bits (196), Expect = 2e-16
Identities = 36/90 (40%), Positives = 55/90 (61%)
Frame = +1
Query: 268 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ 447
T+K+F+GGL TT+ K ++E++G DVVVM D T R +GFGF+TY V+
Sbjct: 119 TKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVM 178
Query: 448 NNRPHKIDGRIVEPKRAVPREEIKRPEASA 537
+ H++ + VE KRA+P+E I+ +A
Sbjct: 179 QSNFHELSDKRVEVKRAIPKEGIQSNNGNA 208
Score = 64.5 bits (150), Expect = 6e-11
Identities = 42/147 (28%), Positives = 78/147 (53%), Gaps = 24/147 (16%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 453
KLF+GG+ T++ +LK+++ ++G +++ VV K+ T + +GFGF+ ++ V +A +
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRD 66
Query: 454 RPHKIDGRIVEPKRAVPREEI-KRP------------------EASAT-----VKKLFVA 561
H I G+ V+ ++A+ + E+ ++P E S+ KK+FV
Sbjct: 67 -THFILGKPVDVRKAIRKHELYQQPFSMQFLERKVQQMNGGLREMSSNGVTSRTKKIFVG 125
Query: 562 GLKQDIEEEDLREYFSTFGNIVSVSVV 642
GL + EE+ + YF FG V V+
Sbjct: 126 GLSSNTTEEEFKSYFERFGRTTDVVVM 152
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 72.9 bits (171), Expect = 2e-13
Identities = 45/143 (31%), Positives = 71/143 (49%), Gaps = 5/143 (3%)
Frame = +1
Query: 232 SESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWG--EIVDVVVMKDPKTKRSKGFG 405
SE G + EP KLF+G L Y +L +EQ G EI +V+ +D T +S+GFG
Sbjct: 100 SEDGVGFPEPPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRD--TDQSRGFG 157
Query: 406 FITYSQAHMVDEA-QNNRPHKIDGRIVEPKRAVPR--EEIKRPEASATVKKLFVAGLKQD 576
F+T S ++A + +++GR + RA PR ++P +++V L D
Sbjct: 158 FVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWD 217
Query: 577 IEEEDLREYFSTFGNIVSVSVVT 645
++ L FS G +V VV+
Sbjct: 218 VDSGRLERLFSEHGKVVDARVVS 240
Score = 44.4 bits (100), Expect = 7e-05
Identities = 18/57 (31%), Positives = 34/57 (59%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 444
++++G L + L+ + + G++VD V+ D +T RS+GFGF+ S + V+ A
Sbjct: 208 RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVA 264
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 71.7 bits (168), Expect = 4e-13
Identities = 36/100 (36%), Positives = 54/100 (54%)
Frame = +1
Query: 235 ESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIT 414
E G++ K+F+GGL + T +++ ++EQ+GEIV+ VV+ D T RSKG+GF+T
Sbjct: 10 EGGNNNTTDTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVT 69
Query: 415 YSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREEIKRPEAS 534
+ +A A N IDGR A + RP S
Sbjct: 70 FKEAEAAMRACQNMNPVIDGRRANCNLACLGAQKPRPPTS 109
Score = 35.1 bits (77), Expect = 0.040
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 547 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVT 645
K+FV GL + + + +R YF FG IV V+T
Sbjct: 23 KIFVGGLAWETQRDTMRRYFEQFGEIVEAVVIT 55
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 70.1 bits (164), Expect = 1e-12
Identities = 41/137 (29%), Positives = 69/137 (50%), Gaps = 5/137 (3%)
Frame = +1
Query: 247 DYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQA 426
++ EP KLF+G L Y +L +EQ G + V+ + +T +S+GFGF+T S
Sbjct: 142 EFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSV 201
Query: 427 HMVDEA-QNNRPHKIDGRIVEPKRAVPREEIKRPEASATVK----KLFVAGLKQDIEEED 591
+ A + + ++GR++ +A PR RPE + V +++V L D++
Sbjct: 202 DEAETAVEKFNRYDLNGRLLTVNKAAPRG--SRPERAPRVYEPAFRVYVGNLPWDVDNGR 259
Query: 592 LREYFSTFGNIVSVSVV 642
L + FS G +V VV
Sbjct: 260 LEQLFSEHGKVVEARVV 276
Score = 46.4 bits (105), Expect = 2e-05
Identities = 18/57 (31%), Positives = 37/57 (64%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 444
++++G L + + L++ + + G++V+ V+ D +T RS+GFGF+T S ++EA
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEA 301
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 68.9 bits (161), Expect = 3e-12
Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 1/125 (0%)
Frame = +1
Query: 268 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ 447
T L++G LD TDS L E + Q G++V V V +D T+RS G+G++ Y+ A
Sbjct: 44 TTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRAL 103
Query: 448 NNRPH-KIDGRIVEPKRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNI 624
N ++GR + +V +++ + V +F+ L + I+ + L E FS FG I
Sbjct: 104 NELNFMALNGRAIRVMYSVRDPSLRK----SGVGNIFIKNLDKSIDHKALHETFSAFGPI 159
Query: 625 VSVSV 639
+S V
Sbjct: 160 LSCKV 164
Score = 50.0 bits (114), Expect = 1e-06
Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 5/127 (3%)
Frame = +1
Query: 277 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNR 456
+FI LD +L E + +G I+ V DP + +SKG+GF+ Y DEA
Sbjct: 135 IFIKNLDKSIDHKALHETFSAFGPILSCKVAVDP-SGQSKGYGFVQYD----TDEAAQGA 189
Query: 457 PHKIDGRIVEPKRAVPR---EEIKRPEASATVK--KLFVAGLKQDIEEEDLREYFSTFGN 621
K++G ++ K+ +++R + VK ++V L + + +E+L + F FG
Sbjct: 190 IDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGV 249
Query: 622 IVSVSVV 642
S ++
Sbjct: 250 TTSCVIM 256
Score = 45.6 bits (103), Expect = 3e-05
Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 14/136 (10%)
Frame = +1
Query: 277 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ----AHMVDEA 444
+++ L +D L + + ++G V+M+D + K SKGFGF+ + A VD
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGK-SKGFGFVNFENSDDAARAVDAL 284
Query: 445 QNN----------RPHKIDGRIVEPKRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDL 594
+ K R E K+ + +K + L+V L + + ++ L
Sbjct: 285 NGKTFDDKEWFVGKAQKKSERETELKQKF-EQSLKEAADKSQGSNLYVKNLDESVTDDKL 343
Query: 595 REYFSTFGNIVSVSVV 642
RE+F+ FG I S V+
Sbjct: 344 REHFAPFGTITSCKVM 359
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 67.3 bits (157), Expect = 8e-12
Identities = 35/119 (29%), Positives = 63/119 (52%), Gaps = 1/119 (0%)
Frame = +1
Query: 271 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 450
RKLFI GL TT L+ + +G++ + +V+ D T +SKG+GF+T+ A
Sbjct: 75 RKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALK 134
Query: 451 NRPHKIDGRIVEPKRAVPREEIKRPE-ASATVKKLFVAGLKQDIEEEDLREYFSTFGNI 624
KIDGR+ + A + + A +++K++VA + D+ + L +F +G++
Sbjct: 135 EPSKKIDGRVTVTQLAASGNQGTGSQIADISMRKIYVANVPFDMPADRLLNHFMAYGDV 193
Score = 32.3 bits (70), Expect = 0.28
Identities = 19/85 (22%), Positives = 38/85 (44%)
Frame = +1
Query: 271 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 450
RK+++ + + L + +G++ + + D T +S+GF Y A A
Sbjct: 167 RKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALA 226
Query: 451 NRPHKIDGRIVEPKRAVPREEIKRP 525
+ IDG+ + K AV ++ +P
Sbjct: 227 DPVKVIDGKHLNCKLAVDGKKGGKP 251
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 67.3 bits (157), Expect = 8e-12
Identities = 35/119 (29%), Positives = 63/119 (52%), Gaps = 1/119 (0%)
Frame = +1
Query: 271 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 450
RKLFI GL TT L+ + +G++ + +V+ D T +SKG+GF+T+ A
Sbjct: 75 RKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALK 134
Query: 451 NRPHKIDGRIVEPKRAVPREEIKRPE-ASATVKKLFVAGLKQDIEEEDLREYFSTFGNI 624
KIDGR+ + A + + A +++K++VA + D+ + L +F +G++
Sbjct: 135 EPSKKIDGRVTVTQLAASGNQGTGSQIADISMRKIYVANVPFDMPADRLLNHFMAYGDV 193
Score = 32.3 bits (70), Expect = 0.28
Identities = 19/85 (22%), Positives = 38/85 (44%)
Frame = +1
Query: 271 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 450
RK+++ + + L + +G++ + + D T +S+GF Y A A
Sbjct: 167 RKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALA 226
Query: 451 NRPHKIDGRIVEPKRAVPREEIKRP 525
+ IDG+ + K AV ++ +P
Sbjct: 227 DPVKVIDGKHLNCKLAVDGKKGGKP 251
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 64.5 bits (150), Expect = 6e-11
Identities = 36/124 (29%), Positives = 64/124 (51%), Gaps = 1/124 (0%)
Frame = +1
Query: 277 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNR 456
L++G LD+ TDS L +++ + ++V V V +D T S G+G++ YS ++A
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
Query: 457 PHK-IDGRIVEPKRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSV 633
+ ++G+++ + +R + V LFV L + ++ + L E FS G IVS
Sbjct: 108 NYSYLNGKMIRITYSSRDSSARR----SGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSC 163
Query: 634 SVVT 645
V T
Sbjct: 164 KVAT 167
Score = 46.0 bits (104), Expect = 2e-05
Identities = 41/137 (29%), Positives = 63/137 (45%), Gaps = 15/137 (10%)
Frame = +1
Query: 277 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY---SQAHMVDEAQ 447
+++ L TTD LK + Q+G I VVM+D K S+ FGF+ + A EA
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGK-SRCFGFVNFENPEDAARAVEAL 285
Query: 448 NNRPHKIDGR---IVEPKRAVPRE-EIKRPEASATVK--------KLFVAGLKQDIEEED 591
N + K D + + + ++ RE E+ R + L+V L + +E
Sbjct: 286 NGK--KFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEK 343
Query: 592 LREYFSTFGNIVSVSVV 642
LRE F+ FG I S V+
Sbjct: 344 LRELFAEFGTITSCKVM 360
Score = 45.2 bits (102), Expect = 4e-05
Identities = 27/92 (29%), Positives = 43/92 (46%)
Frame = +1
Query: 277 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNR 456
L++ LD TD L+E + ++G I VM+DP + SKG GF+ +S A N
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDP-SGTSKGSGFVAFSAASEASRVLNEM 388
Query: 457 PHKIDGRIVEPKRAVPREEIKRPEASATVKKL 552
K+ G R+E +R + A ++
Sbjct: 389 NGKMVGGKPLYVALAQRKEERRAKLQAQFSQM 420
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 64.1 bits (149), Expect = 8e-11
Identities = 31/75 (41%), Positives = 44/75 (58%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 453
K+++ GL + T L ++E++GEIV V+ D T+RSKGFGF+T+ + A N
Sbjct: 10 KIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACEN 69
Query: 454 RPHKIDGRIVEPKRA 498
H IDGR V K A
Sbjct: 70 PNHTIDGRTVNCKLA 84
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = +1
Query: 547 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVV 642
K++VAGL E L YF FG IV VV
Sbjct: 10 KIYVAGLPWITRTEGLISYFERFGEIVYAKVV 41
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 64.1 bits (149), Expect = 8e-11
Identities = 32/87 (36%), Positives = 54/87 (62%), Gaps = 1/87 (1%)
Frame = +1
Query: 253 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHM 432
E+PE+ + FIGGL + T+D L++ +E++G +V+ V+ D + RS+GFGFIT+ +
Sbjct: 3 EDPEY--RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKA 60
Query: 433 VDEA-QNNRPHKIDGRIVEPKRAVPRE 510
+DEA +DGR + +A P +
Sbjct: 61 MDEAIAAMNGMDLDGRTITVDKAQPHQ 87
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 63.3 bits (147), Expect = 1e-10
Identities = 28/68 (41%), Positives = 47/68 (69%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 453
KLF+GGL + T DSSLK+ + +GE+ + V+ D +T RS+GFGF+++S +++ NN
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFS----CEDSANN 91
Query: 454 RPHKIDGR 477
++DG+
Sbjct: 92 AIKEMDGK 99
Score = 30.7 bits (66), Expect = 0.87
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 547 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVV 642
KLFV GL ++ L++ F++FG + +V+
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVI 67
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 63.3 bits (147), Expect = 1e-10
Identities = 28/68 (41%), Positives = 47/68 (69%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 453
KLF+GGL + T DSSLK+ + +GE+ + V+ D +T RS+GFGF+++S +++ NN
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFS----CEDSANN 91
Query: 454 RPHKIDGR 477
++DG+
Sbjct: 92 AIKEMDGK 99
Score = 30.7 bits (66), Expect = 0.87
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 547 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVV 642
KLFV GL ++ L++ F++FG + +V+
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVI 67
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 62.9 bits (146), Expect = 2e-10
Identities = 28/68 (41%), Positives = 43/68 (63%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 453
K+F+GGL + T +L++ +EQ+GEI++ VV+ D T RSKG+GF+T+ A +
Sbjct: 25 KVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACAD 84
Query: 454 RPHKIDGR 477
IDGR
Sbjct: 85 PTPIIDGR 92
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 62.9 bits (146), Expect = 2e-10
Identities = 28/68 (41%), Positives = 45/68 (66%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 453
K+F+GGL + T ++K+ +EQ+GEI++ VV+ D + RSKG+GF+T+ +A A +
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 454 RPHKIDGR 477
IDGR
Sbjct: 74 ATPVIDGR 81
Score = 32.7 bits (71), Expect = 0.21
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +1
Query: 538 TVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVT 645
T K+FV GL + +E ++++F FG I+ V+T
Sbjct: 11 TYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVIT 46
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 62.9 bits (146), Expect = 2e-10
Identities = 28/68 (41%), Positives = 45/68 (66%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 453
K+F+GGL + T ++K+ +EQ+GEI++ VV+ D + RSKG+GF+T+ +A A +
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 454 RPHKIDGR 477
IDGR
Sbjct: 74 ATPVIDGR 81
Score = 32.7 bits (71), Expect = 0.21
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +1
Query: 538 TVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVT 645
T K+FV GL + +E ++++F FG I+ V+T
Sbjct: 11 TYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVIT 46
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 62.9 bits (146), Expect = 2e-10
Identities = 28/68 (41%), Positives = 45/68 (66%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 453
K+F+GGL + T ++K+ +EQ+GEI++ VV+ D + RSKG+GF+T+ +A A +
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 454 RPHKIDGR 477
IDGR
Sbjct: 74 ATPVIDGR 81
Score = 32.7 bits (71), Expect = 0.21
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +1
Query: 538 TVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVT 645
T K+FV GL + +E ++++F FG I+ V+T
Sbjct: 11 TYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVIT 46
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 62.5 bits (145), Expect = 2e-10
Identities = 28/68 (41%), Positives = 44/68 (64%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 453
K+F+GGL + T SL+ ++EQ+G+IV+ VV+ D + RSKG+GF+T+ +A +
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
Query: 454 RPHKIDGR 477
IDGR
Sbjct: 68 PAPVIDGR 75
Score = 35.5 bits (78), Expect = 0.030
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +1
Query: 538 TVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVT 645
T K+FV GL + + LR YF FG+IV V+T
Sbjct: 5 TFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVIT 40
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 62.5 bits (145), Expect = 2e-10
Identities = 28/68 (41%), Positives = 44/68 (64%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 453
K+F+GGL + T SL+ ++EQ+G+IV+ VV+ D + RSKG+GF+T+ +A +
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
Query: 454 RPHKIDGR 477
IDGR
Sbjct: 68 PAPVIDGR 75
Score = 35.5 bits (78), Expect = 0.030
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +1
Query: 538 TVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVT 645
T K+FV GL + + LR YF FG+IV V+T
Sbjct: 5 TFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVIT 40
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 62.1 bits (144), Expect = 3e-10
Identities = 25/68 (36%), Positives = 44/68 (64%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 453
K+F+GGL + T ++ ++EQ+GEI++ V++ D T +SKG+GF+T+ ++ A +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 454 RPHKIDGR 477
IDGR
Sbjct: 78 PNPVIDGR 85
Score = 35.9 bits (79), Expect = 0.023
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 517 KRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVT 645
+ P T K+FV GL + +++R YF FG I+ ++T
Sbjct: 8 RSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIIT 50
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 62.1 bits (144), Expect = 3e-10
Identities = 25/68 (36%), Positives = 44/68 (64%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 453
K+F+GGL + T ++ ++EQ+GEI++ V++ D T +SKG+GF+T+ ++ A +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 454 RPHKIDGR 477
IDGR
Sbjct: 78 PNPVIDGR 85
Score = 35.9 bits (79), Expect = 0.023
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 517 KRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVT 645
+ P T K+FV GL + +++R YF FG I+ ++T
Sbjct: 8 RSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIIT 50
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 61.7 bits (143), Expect = 4e-10
Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QN 450
KLFIGG+ Y + SL+E + ++GE+VD V+ D +T RS+GFGF+T++ + A Q
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100
Query: 451 NRPHKIDGRIVEPKRAVPR 507
+ GR+V+ A R
Sbjct: 101 LDGRDLHGRVVKVNYANDR 119
Score = 33.9 bits (74), Expect = 0.093
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +1
Query: 547 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVV 642
KLF+ G+ ++E+ LRE F+ +G +V V+
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVI 72
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 61.7 bits (143), Expect = 4e-10
Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 1/69 (1%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQN 450
K+F+G L +RTT L+ ++EQ+G++VD V+ + RSKG+GFIT+ V QN
Sbjct: 13 KIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVRALQN 72
Query: 451 NRPHKIDGR 477
++P IDGR
Sbjct: 73 SKP-IIDGR 80
Score = 33.9 bits (74), Expect = 0.093
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +1
Query: 541 VKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVT 645
V K+FV L +DLR YF FG +V +VV+
Sbjct: 11 VTKIFVGNLTWRTTADDLRRYFEQFGQVVDANVVS 45
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 61.3 bits (142), Expect = 5e-10
Identities = 35/134 (26%), Positives = 65/134 (48%)
Frame = +1
Query: 232 SESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 411
S +G D + T KLF+G + T+ ++ ++EQ G +++V ++KD +T + +G F+
Sbjct: 107 SFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFV 166
Query: 412 TYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREEIKRPEASATVKKLFVAGLKQDIEEED 591
Y+ + D A ++I V + +R KLFV L + E++
Sbjct: 167 KYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKE 226
Query: 592 LREYFSTFGNIVSV 633
+ E F FG++ V
Sbjct: 227 VEEIFLQFGHVEDV 240
Score = 47.2 bits (107), Expect = 9e-06
Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 9/88 (10%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN- 450
KLF+G L+ + T+ ++E + Q+G + DV +M+D + ++S+G GF+ YS A +
Sbjct: 212 KLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRD-EYRQSRGCGFVKYSSKETAMAAIDG 270
Query: 451 -NRPHKIDG-------RIVEPKRAVPRE 510
N + + G R EPKR P E
Sbjct: 271 LNGTYTMRGCNQPLIVRFAEPKRPKPGE 298
Score = 34.3 bits (75), Expect = 0.070
Identities = 15/39 (38%), Positives = 26/39 (66%)
Frame = +1
Query: 526 EASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVV 642
+ S+TVK LFV + + EE++R YF GN++ V+++
Sbjct: 115 DRSSTVK-LFVGSVPRTATEEEIRPYFEQHGNVLEVALI 152
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 61.3 bits (142), Expect = 5e-10
Identities = 35/134 (26%), Positives = 65/134 (48%)
Frame = +1
Query: 232 SESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 411
S +G D + T KLF+G + T+ ++ ++EQ G +++V ++KD +T + +G F+
Sbjct: 107 SFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFV 166
Query: 412 TYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREEIKRPEASATVKKLFVAGLKQDIEEED 591
Y+ + D A ++I V + +R KLFV L + E++
Sbjct: 167 KYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKE 226
Query: 592 LREYFSTFGNIVSV 633
+ E F FG++ V
Sbjct: 227 VEEIFLQFGHVEDV 240
Score = 47.2 bits (107), Expect = 9e-06
Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 9/88 (10%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN- 450
KLF+G L+ + T+ ++E + Q+G + DV +M+D + ++S+G GF+ YS A +
Sbjct: 212 KLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRD-EYRQSRGCGFVKYSSKETAMAAIDG 270
Query: 451 -NRPHKIDG-------RIVEPKRAVPRE 510
N + + G R EPKR P E
Sbjct: 271 LNGTYTMRGCNQPLIVRFAEPKRPKPGE 298
Score = 34.3 bits (75), Expect = 0.070
Identities = 15/39 (38%), Positives = 26/39 (66%)
Frame = +1
Query: 526 EASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVV 642
+ S+TVK LFV + + EE++R YF GN++ V+++
Sbjct: 115 DRSSTVK-LFVGSVPRTATEEEIRPYFEQHGNVLEVALI 152
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 61.3 bits (142), Expect = 5e-10
Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 453
++++G L TTD L+E + +G +VD +VM+D T RS+GFGF+TYS + A +
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63
Query: 454 RPHK-IDGRIVEPK 492
K ++GR V K
Sbjct: 64 MDGKELNGRRVSVK 77
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 60.9 bits (141), Expect = 7e-10
Identities = 29/82 (35%), Positives = 48/82 (58%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 453
K+++GGL + T L F++++GEI+ V V+ D +T RS+G+GF+T+ A A +
Sbjct: 14 KIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKD 73
Query: 454 RPHKIDGRIVEPKRAVPREEIK 519
I+GRI K A ++K
Sbjct: 74 PNPTIEGRITNCKLAFVGAKVK 95
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 60.9 bits (141), Expect = 7e-10
Identities = 31/85 (36%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Frame = +1
Query: 232 SESGDDYEEPE-HTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGF 408
S DD E P T+KLFI GL + T++ +L+ +E +GE+V+V ++ D +KRSKG+ F
Sbjct: 268 SRDQDDSESPPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAF 327
Query: 409 ITYSQAHMVDEAQNNRPHKIDGRIV 483
+ Y+ +EA +++G+I+
Sbjct: 328 LEYT----TEEAAGTALKEMNGKII 348
Score = 31.9 bits (69), Expect = 0.37
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 544 KKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVV 642
KKLF+ GL E+ LR F FG +V V ++
Sbjct: 282 KKLFITGLSFYTSEKTLRAAFEGFGELVEVKII 314
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 60.9 bits (141), Expect = 7e-10
Identities = 26/76 (34%), Positives = 47/76 (61%)
Frame = +1
Query: 250 YEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAH 429
+ + HT K+F+GGL + T ++ +++Q+GEI++ V++ D T +SKG+GF+T+ +
Sbjct: 11 FGDTTHT-KVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSD 69
Query: 430 MVDEAQNNRPHKIDGR 477
A + IDGR
Sbjct: 70 SATRAVADPNPVIDGR 85
Score = 35.1 bits (77), Expect = 0.040
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 517 KRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVT 645
+ P T K+FV GL + +++R YF FG I+ ++T
Sbjct: 8 RSPFGDTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIIT 50
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 59.7 bits (138), Expect = 2e-09
Identities = 25/79 (31%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQN 450
+ F+GGL + T D L+ + Q+G+++D ++ D ++ RS+GFGF+T+ + M D +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 451 NRPHKIDGRIVEPKRAVPR 507
++DGR++ A R
Sbjct: 67 MNGKELDGRVITVNEAQSR 85
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 547 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVV 642
+ FV GL +EDL+ FS FG+++ ++
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKII 38
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 59.7 bits (138), Expect = 2e-09
Identities = 25/79 (31%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQN 450
+ F+GGL + T D L+ + Q+G+++D ++ D ++ RS+GFGF+T+ + M D +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 451 NRPHKIDGRIVEPKRAVPR 507
++DGR++ A R
Sbjct: 67 MNGKELDGRVITVNEAQSR 85
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 547 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVV 642
+ FV GL +EDL+ FS FG+++ ++
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKII 38
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 59.7 bits (138), Expect = 2e-09
Identities = 25/79 (31%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQN 450
+ F+GGL + T D L+ + Q+G+++D ++ D ++ RS+GFGF+T+ + M D +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 451 NRPHKIDGRIVEPKRAVPR 507
++DGR++ A R
Sbjct: 67 MNGKELDGRVITVNEAQSR 85
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 547 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVV 642
+ FV GL +EDL+ FS FG+++ ++
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKII 38
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 59.7 bits (138), Expect = 2e-09
Identities = 25/78 (32%), Positives = 43/78 (55%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 453
K+F+GG+ Y T + L+E + ++GE+VD ++ D +T RS+GF F+T++ A
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQL 94
Query: 454 RPHKIDGRIVEPKRAVPR 507
+ GR + A R
Sbjct: 95 DGQDLHGRRIRVNYATER 112
Score = 31.9 bits (69), Expect = 0.37
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 547 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVV 642
K+FV G+ +E LRE FS +G +V ++
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKII 66
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 59.7 bits (138), Expect = 2e-09
Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 453
K+F+GGL T LKE + +G+IVD VV+ D ++ S+GFGF+TY + + A
Sbjct: 37 KIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQA 96
Query: 454 RPHK-IDGRIV 483
+K +DGRI+
Sbjct: 97 MQNKELDGRII 107
Score = 34.3 bits (75), Expect = 0.070
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = +1
Query: 484 EPKRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVV 642
+P+ + + S T K+FV GL + E L+E F +FG IV VV
Sbjct: 16 QPRALQASNAMLQGNLSLTPSKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVV 68
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 59.3 bits (137), Expect = 2e-09
Identities = 26/68 (38%), Positives = 42/68 (61%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 453
K+F+GGL + T +L+ ++Q+G+I++ VV+ D T RSKG+GF+T+ A +
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVD 84
Query: 454 RPHKIDGR 477
IDGR
Sbjct: 85 PTPIIDGR 92
Score = 35.9 bits (79), Expect = 0.023
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +1
Query: 514 IKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVT 645
+ P T K+FV GL + + E LR +F +G+I+ V+T
Sbjct: 14 LNSPFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVIT 57
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 58.8 bits (136), Expect = 3e-09
Identities = 42/135 (31%), Positives = 65/135 (48%), Gaps = 13/135 (9%)
Frame = +1
Query: 277 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNN 453
+++ L TTD LK + ++G+I VVMKD + K SKGFGF+ + A A ++
Sbjct: 31 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGK-SKGFGFVNFENADDAARAVESL 89
Query: 454 RPHKIDGR---IVEPKRAVPREEIKRPEASATVKK---------LFVAGLKQDIEEEDLR 597
HK D + + ++ RE R +K+ L+V L I +E L+
Sbjct: 90 NGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLK 149
Query: 598 EYFSTFGNIVSVSVV 642
E FS FG + S V+
Sbjct: 150 EIFSPFGTVTSSKVM 164
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/72 (30%), Positives = 38/72 (52%)
Frame = +1
Query: 277 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNR 456
L++ LD +D LKE + +G + VM+DP SKG GF+ ++ EA +
Sbjct: 134 LYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDP-NGTSKGSGFVAFATPEEATEAMS-- 190
Query: 457 PHKIDGRIVEPK 492
++ G+++E K
Sbjct: 191 --QLSGKMIESK 200
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 58.8 bits (136), Expect = 3e-09
Identities = 31/85 (36%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 453
+LF+ GL TT+ L++ + +G++VD V+ D + RSKGFGF+TY+ ++A+
Sbjct: 35 RLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAE 94
Query: 454 RPHK-IDGRIVEPKRAVPREEIKRP 525
K +DG ++ A PRE +RP
Sbjct: 95 MNAKFLDGWVIFVDPARPREP-RRP 118
Score = 32.7 bits (71), Expect = 0.21
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = +1
Query: 529 ASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVT 645
++ T +LFV+GL + E L++ F++FG +V V+T
Sbjct: 29 STLTSPRLFVSGLSRLTTNEKLQDAFASFGQLVDARVIT 67
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 58.4 bits (135), Expect = 4e-09
Identities = 27/58 (46%), Positives = 40/58 (68%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ 447
KLFIGGL + TT+ L E + + G++V+ ++ D + RSKGFGF+T++ A DEAQ
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASA---DEAQ 89
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 58.4 bits (135), Expect = 4e-09
Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QN 450
++F+GGL TD L+ + ++G+I+D +M + T RS+GFGFIT++ +DE+ +
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIRE 67
Query: 451 NRPHKIDGRIVEPKRAVPR 507
R++ RA P+
Sbjct: 68 MHGRDFGDRVISVNRAEPK 86
Score = 31.1 bits (67), Expect = 0.65
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 547 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVV 642
++FV GL ++ + DL FS FG+I+ ++
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDILDCQIM 39
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 58.4 bits (135), Expect = 4e-09
Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQN 450
+ F+GGL + T D +L+ + Q+G+++D ++ D +T RS+GFGF+T+ + M D +
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 451 NRPHKIDGRIVEPKRAVPR 507
+DGR + A R
Sbjct: 69 MNGQDLDGRSITVNEAQSR 87
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 58.4 bits (135), Expect = 4e-09
Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQN 450
+ F+GGL + T D +L+ + Q+G+++D ++ D +T RS+GFGF+T+ + M D +
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 451 NRPHKIDGRIVEPKRAVPR 507
+DGR + A R
Sbjct: 69 MNGQDLDGRSITVNEAQSR 87
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 58.0 bits (134), Expect = 5e-09
Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 453
KLFIGGL + T D+SL++ + +G++VD V+ D +T RS+GFGF+ ++ A +
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 454 RPHK-IDGRIVEPKRAVPREEIKR 522
K ++GR + A R R
Sbjct: 96 MDGKELNGRHIRVNPANDRPSAPR 119
Score = 31.5 bits (68), Expect = 0.50
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 547 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVV 642
KLF+ GL ++ LR+ F+ FG++V V+
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVI 67
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 58.0 bits (134), Expect = 5e-09
Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 453
KLFIGGL + T D+SL++ + +G++VD V+ D +T RS+GFGF+ ++ A +
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 454 RPHK-IDGRIVEPKRAVPREEIKR 522
K ++GR + A R R
Sbjct: 96 MDGKELNGRHIRVNPANDRPSAPR 119
Score = 31.5 bits (68), Expect = 0.50
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 547 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVV 642
KLF+ GL ++ LR+ F+ FG++V V+
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVI 67
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 57.6 bits (133), Expect = 7e-09
Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 14/138 (10%)
Frame = +1
Query: 253 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHM 432
E+P H RK+F+ GL + T +L E ++Q+GEI D + D + +SKG+GFI Y
Sbjct: 135 EDPVH-RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSG 193
Query: 433 VDEAQNNRPHKIDGRIVEPKRA----------VPREEIKRP----EASATVKKLFVAGLK 570
A KI R+ + A + + P + T KK++V+ +
Sbjct: 194 ARNALKQPQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVG 253
Query: 571 QDIEEEDLREYFSTFGNI 624
+++ + L +FS FG I
Sbjct: 254 AELDPQKLLMFFSKFGEI 271
Score = 38.3 bits (85), Expect = 0.004
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Frame = +1
Query: 250 YEEPEHT-RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQA 426
+ EHT +K+++ + L F+ ++GEI + + D T R KGF Y +
Sbjct: 237 HSNSEHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSS 296
Query: 427 HMVDEAQNNRPHK-IDGRIVEPKRAV 501
A PHK +G I+ ++A+
Sbjct: 297 ESAKRAL-EEPHKTFEGHILHCQKAI 321
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 57.6 bits (133), Expect = 7e-09
Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 14/138 (10%)
Frame = +1
Query: 253 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHM 432
E+P H RK+F+ GL + T +L E ++Q+GEI D + D + +SKG+GFI Y
Sbjct: 135 EDPVH-RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSG 193
Query: 433 VDEAQNNRPHKIDGRIVEPKRA----------VPREEIKRP----EASATVKKLFVAGLK 570
A KI R+ + A + + P + T KK++V+ +
Sbjct: 194 ARNALKQPQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVG 253
Query: 571 QDIEEEDLREYFSTFGNI 624
+++ + L +FS FG I
Sbjct: 254 AELDPQKLLMFFSKFGEI 271
Score = 38.3 bits (85), Expect = 0.004
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Frame = +1
Query: 250 YEEPEHT-RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQA 426
+ EHT +K+++ + L F+ ++GEI + + D T R KGF Y +
Sbjct: 237 HSNSEHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSS 296
Query: 427 HMVDEAQNNRPHK-IDGRIVEPKRAV 501
A PHK +G I+ ++A+
Sbjct: 297 ESAKRAL-EEPHKTFEGHILHCQKAI 321
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 57.6 bits (133), Expect = 7e-09
Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 14/138 (10%)
Frame = +1
Query: 253 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHM 432
E+P H RK+F+ GL + T +L E ++Q+GEI D + D + +SKG+GFI Y
Sbjct: 135 EDPVH-RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSG 193
Query: 433 VDEAQNNRPHKIDGRIVEPKRA----------VPREEIKRP----EASATVKKLFVAGLK 570
A KI R+ + A + + P + T KK++V+ +
Sbjct: 194 ARNALKQPQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVG 253
Query: 571 QDIEEEDLREYFSTFGNI 624
+++ + L +FS FG I
Sbjct: 254 AELDPQKLLMFFSKFGEI 271
Score = 38.3 bits (85), Expect = 0.004
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Frame = +1
Query: 250 YEEPEHT-RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQA 426
+ EHT +K+++ + L F+ ++GEI + + D T R KGF Y +
Sbjct: 237 HSNSEHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSS 296
Query: 427 HMVDEAQNNRPHK-IDGRIVEPKRAV 501
A PHK +G I+ ++A+
Sbjct: 297 ESAKRAL-EEPHKTFEGHILHCQKAI 321
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 57.6 bits (133), Expect = 7e-09
Identities = 38/126 (30%), Positives = 61/126 (48%), Gaps = 8/126 (6%)
Frame = +1
Query: 271 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 450
RK+F+ GL + T SL + ++Q+GEI D + D + +SKG+GFI + A
Sbjct: 128 RKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALK 187
Query: 451 NRPHKIDGRIVEPKRA----VPREEIKRP----EASATVKKLFVAGLKQDIEEEDLREYF 606
KI R+ + A V + P +K++V+ + DI+ + L E+F
Sbjct: 188 QPQKKIGTRMTACQLASIGPVQGNPVVAPAQHFNPENVQRKIYVSNVSADIDPQKLLEFF 247
Query: 607 STFGNI 624
S FG I
Sbjct: 248 SRFGEI 253
Score = 37.9 bits (84), Expect = 0.006
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Frame = +1
Query: 259 PEHT-RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMV 435
PE+ RK+++ + L EF+ ++GEI + + D T R KGF Y
Sbjct: 222 PENVQRKIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESA 281
Query: 436 DEAQNNRPHK-IDGRIVEPKRA 498
+A PHK +G ++ +A
Sbjct: 282 KKAL-EEPHKTFEGHVLHCHKA 302
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 57.6 bits (133), Expect = 7e-09
Identities = 25/84 (29%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQAHMVDEAQN 450
KL++ GL +RTT+ +L++ +EQ+G ++ + ++ D R KGF F+ Y ++ + Q
Sbjct: 78 KLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQG 137
Query: 451 NRPHKIDGRIVEPKRAVPREEIKR 522
+DGR++ + A R ++ R
Sbjct: 138 MHGKFLDGRVIFVEEAKTRSDMSR 161
Score = 33.1 bits (72), Expect = 0.16
Identities = 16/41 (39%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Frame = +1
Query: 523 PEASATVK-KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVV 642
P +S+ K KL+V+GL E+ LR+ F FGN++ +++V
Sbjct: 69 PSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMV 109
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 57.2 bits (132), Expect = 9e-09
Identities = 29/83 (34%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 453
+LF+ L TTD SL++ + +G+I + +++D +T+R KGFGFIT+ +A +
Sbjct: 8 QLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKS 67
Query: 454 RPHKI-DGRIVEPKRAVPREEIK 519
KI DGR++ + A EE++
Sbjct: 68 LDGKIVDGRLIFVEVAKNAEEVR 90
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 56.0 bits (129), Expect = 2e-08
Identities = 40/137 (29%), Positives = 63/137 (45%), Gaps = 16/137 (11%)
Frame = +1
Query: 277 LFIGGLDYRTTDSSLKE-FYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 453
+F+G L +D+ L E F E++ + V+ D T RSKG+GF+ + + +A
Sbjct: 199 IFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTE 258
Query: 454 RPH-KIDGRIVEPKRAVPREE--------------IKRPEASATVKKLFVAGLKQDIEEE 588
K R + A PR+ + RPE +FV GL + +E
Sbjct: 259 MNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTDE 318
Query: 589 DLREYFSTFGNIVSVSV 639
DL++ F+ FG IVSV +
Sbjct: 319 DLKQPFNEFGEIVSVKI 335
Score = 38.7 bits (86), Expect = 0.003
Identities = 21/56 (37%), Positives = 30/56 (53%)
Frame = +1
Query: 277 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 444
+F+GGLD TD LK+ + ++GEIV V K KG GF+ + +EA
Sbjct: 306 IFVGGLDSSVTDEDLKQPFNEFGEIVSV------KIPVGKGCGFVQFVNRPNAEEA 355
Score = 30.3 bits (65), Expect = 1.1
Identities = 27/118 (22%), Positives = 49/118 (41%), Gaps = 5/118 (4%)
Frame = +1
Query: 271 RKLFIGGLDYRTTDSSLKEFYEQWGE--IVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 444
+ +++G L + ++ L + E IV V V+++ S+G+GF+ + + D+
Sbjct: 101 KTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKV 160
Query: 445 QNNRPHKIDGRIVEPKR---AVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFS 609
+P R A KR E + +FV L D+ + L E FS
Sbjct: 161 LREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFS 218
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 55.6 bits (128), Expect = 3e-08
Identities = 39/131 (29%), Positives = 63/131 (48%), Gaps = 1/131 (0%)
Frame = +1
Query: 241 GDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYS 420
G E +++GGLD + ++ L E + Q G +V+V V KD T + +GFI Y
Sbjct: 15 GQHSAERNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYR 74
Query: 421 QAHMVDEA-QNNRPHKIDGRIVEPKRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLR 597
D A + K+ G+ + +A ++ K + A LF+ L D++E+ L
Sbjct: 75 SEEDADYAIKVLNMIKLHGKPIRVNKA--SQDKKSLDVGA---NLFIGNLDPDVDEKLLY 129
Query: 598 EYFSTFGNIVS 630
+ FS FG I S
Sbjct: 130 DTFSAFGVIAS 140
Score = 42.7 bits (96), Expect = 2e-04
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = +1
Query: 223 MKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIV-DVVVMKDPKTKRSKG 399
++ +++ D + + LFIG LD + L + + +G I + +M+DP T S+G
Sbjct: 96 IRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRG 155
Query: 400 FGFITYSQAHMVDEA 444
FGFI+Y D A
Sbjct: 156 FGFISYDSFEASDAA 170
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 55.2 bits (127), Expect = 4e-08
Identities = 23/68 (33%), Positives = 43/68 (63%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 453
K+F+GGL + T ++ + + ++G+I++ V++ D T+RSKG+GF+T+ A A +
Sbjct: 18 KVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACED 77
Query: 454 RPHKIDGR 477
I+GR
Sbjct: 78 STPIINGR 85
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 54.4 bits (125), Expect = 6e-08
Identities = 42/156 (26%), Positives = 71/156 (45%), Gaps = 14/156 (8%)
Frame = +1
Query: 217 LNMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSK 396
+++ P S +++ +++ L TD+ LK + ++GEI VVMKD + K S+
Sbjct: 101 IHVCPFVSRGQWDKSRVFTNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGK-SR 159
Query: 397 GFGFITYSQAH------------MVDEAQNN--RPHKIDGRIVEPKRAVPREEIKRPEAS 534
FGF+ + +A +VDE + + R + R + K E+I R +
Sbjct: 160 RFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKT 219
Query: 535 ATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVV 642
L+V L ++ L E FS FG I S V+
Sbjct: 220 RKGMNLYVKNLDDSVDNTKLEELFSEFGTITSCKVM 255
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 54.4 bits (125), Expect = 6e-08
Identities = 28/96 (29%), Positives = 54/96 (56%), Gaps = 2/96 (2%)
Frame = +1
Query: 217 LNMKPSES-GDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRS 393
L+ P+ S D E P ++ L++ GL +R T+ L++ + + G++ DV ++ DP T+ S
Sbjct: 58 LSRSPTRSVSSDAENPGNS--LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRES 115
Query: 394 KGFGFITYSQAHMVDEAQNNRPHKI-DGRIVEPKRA 498
+GFGFI+ + + H + GR++ ++A
Sbjct: 116 RGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEKA 151
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 54.0 bits (124), Expect = 8e-08
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Frame = +1
Query: 256 EPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMV 435
+ E + LF+ GL RTT L+ + Q+GE+ D V+ D + SKGFGF+ Y+
Sbjct: 51 QAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDS 110
Query: 436 DEAQNNRPHK-IDGRIVEPKRAVPREE 513
+ K +DG ++ + A PRE+
Sbjct: 111 AKGIAGMDGKFLDGWVIFAEYARPREQ 137
Score = 33.5 bits (73), Expect = 0.12
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = +1
Query: 520 RPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVT 645
RP+A + LFV+GL + E LR F+ FG + VVT
Sbjct: 49 RPQAEPSTN-LFVSGLSKRTTSEGLRTAFAQFGEVADAKVVT 89
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 53.6 bits (123), Expect = 1e-07
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QN 450
+L++G L Y T S L + + + G +VDV ++ D T RS+GFGF+T EA Q
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176
Query: 451 NRPHKIDGRIVE 486
+I GR V+
Sbjct: 177 FNSSQIGGRTVK 188
Score = 43.6 bits (98), Expect = 1e-04
Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Frame = +1
Query: 214 ILNMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRS 393
++ K ++ Y + H K++ G L + T LK+ + ++ V+ + T RS
Sbjct: 202 VMRTKIRDNNRSYVDSPH--KVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRS 259
Query: 394 KGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEPKRAVPREE 513
+GFGFI++ A V A +++GR + A RE+
Sbjct: 260 RGFGFISFESAENVQSALATMNGVEVEGRALRLNLASEREK 300
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 52.8 bits (121), Expect = 2e-07
Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 453
+L++G L + D +L+ + + G++V+ V+ D + RSKGFGF+T S + V +A N+
Sbjct: 250 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 309
Query: 454 -RPHKIDGRIVEPKRAVPR 507
+DGR + A R
Sbjct: 310 LNGADLDGRQIRVSEAEAR 328
Score = 50.4 bits (115), Expect = 1e-06
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD-EAQN 450
KLF+G L + + L + +E G + V V+ D T RS+GFGF+T S A V+ AQ
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 451 NRPHKIDGR 477
++ +GR
Sbjct: 160 FNGYEFEGR 168
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 52.8 bits (121), Expect = 2e-07
Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 453
+L++G L + D +L+ + + G++V+ V+ D + RSKGFGF+T S + V +A N+
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 454 -RPHKIDGRIVEPKRAVPR 507
+DGR + A R
Sbjct: 318 LNGADLDGRQIRVSEAEAR 336
Score = 50.4 bits (115), Expect = 1e-06
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD-EAQN 450
KLF+G L + + L + +E G + V V+ D T RS+GFGF+T S A V+ AQ
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 451 NRPHKIDGR 477
++ +GR
Sbjct: 160 FNGYEFEGR 168
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 52.8 bits (121), Expect = 2e-07
Identities = 47/194 (24%), Positives = 84/194 (43%), Gaps = 14/194 (7%)
Frame = +1
Query: 103 RKEAHGIFNTAETKT*QIKLKSNS*LIINILGLQV**ILNMKPSESGDDYEEPEHTRKLF 282
R + +G + +T Q + + +++N + V + + + P T ++
Sbjct: 170 RSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTN-VY 228
Query: 283 IGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY---SQAHMVDEAQN- 450
+ L TD LK+ + ++G+I VVMKD ++ S+ FGF+ + A + E N
Sbjct: 229 VKNLPKEITDDELKKTFGKYGDISSAVVMKD-QSGNSRSFGFVNFVSPEAAAVAVEKMNG 287
Query: 451 ----------NRPHKIDGRIVEPKRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLRE 600
R K R E +R +E I R E L++ L + +E L+E
Sbjct: 288 ISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFE-KLQGSNLYLKNLDDSVNDEKLKE 346
Query: 601 YFSTFGNIVSVSVV 642
FS +GN+ S V+
Sbjct: 347 MFSEYGNVTSCKVM 360
Score = 39.1 bits (87), Expect = 0.002
Identities = 21/67 (31%), Positives = 32/67 (47%)
Frame = +1
Query: 277 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNR 456
L++ LD D LKE + ++G + VM + + S+GFGF+ YS A
Sbjct: 330 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGL-SRGFGFVAYSNPEEALLAMKEM 388
Query: 457 PHKIDGR 477
K+ GR
Sbjct: 389 NGKMIGR 395
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 52.8 bits (121), Expect = 2e-07
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Frame = +1
Query: 250 YEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-SQA 426
Y E EH KLF+G L + T SL + + G++V V+ D T RS+G+GF+ Y S+A
Sbjct: 172 YPETEH--KLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKA 229
Query: 427 HMVDEAQNNRPHKIDGRIV 483
M ++ +++GR +
Sbjct: 230 EMETALESLDGFELEGRAI 248
Score = 47.2 bits (107), Expect = 9e-06
Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 3/126 (2%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWG--EIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ 447
KL+ G L Y ++L + + + E+V+V+ +D T +S+GF F+T S +
Sbjct: 86 KLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRD--TGQSRGFAFVTMSNVEDCNIII 143
Query: 448 NNRP-HKIDGRIVEPKRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNI 624
+N + GR ++ A + K P T KLFV L + E L F G++
Sbjct: 144 DNLDGTEYLGRALKVNFADKPKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAFRECGDV 203
Query: 625 VSVSVV 642
V VV
Sbjct: 204 VGARVV 209
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 52.8 bits (121), Expect = 2e-07
Identities = 40/137 (29%), Positives = 61/137 (44%), Gaps = 16/137 (11%)
Frame = +1
Query: 277 LFIGGLDYRTTDSSLKE-FYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 453
+F+G L +D+ L E F E++ + V+ D T RSKG+GF+ + + +A
Sbjct: 201 IFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTE 260
Query: 454 RPH-KIDGRIVEPKRAVPREE--------------IKRPEASATVKKLFVAGLKQDIEEE 588
K R + A PR+ R E +FV GL + +E
Sbjct: 261 MNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTDE 320
Query: 589 DLREYFSTFGNIVSVSV 639
DL++ FS FG IVSV +
Sbjct: 321 DLKQPFSEFGEIVSVKI 337
Score = 38.7 bits (86), Expect = 0.003
Identities = 21/56 (37%), Positives = 30/56 (53%)
Frame = +1
Query: 277 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 444
+F+GGLD TD LK+ + ++GEIV V K KG GF+ + +EA
Sbjct: 308 IFVGGLDSSVTDEDLKQPFSEFGEIVSV------KIPVGKGCGFVQFVNRPNAEEA 357
Score = 28.7 bits (61), Expect = 3.5
Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 3/91 (3%)
Frame = +1
Query: 346 EIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ---NNRPHKIDGRIVEPKRAVPREEI 516
EIV + V+++ S+G+GF+ + + D+ N P + A
Sbjct: 130 EIVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQEFNGAPMPNTDQPFRLNWASFSTGE 189
Query: 517 KRPEASATVKKLFVAGLKQDIEEEDLREYFS 609
KR E + +FV L D+ + L E FS
Sbjct: 190 KRLENNGPDLSIFVGDLAPDVSDALLHETFS 220
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 52.8 bits (121), Expect = 2e-07
Identities = 27/91 (29%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
Frame = +1
Query: 217 LNMKPSES-GDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRS 393
L+ P+ S D E P ++ L++ GL +R T+ L++ + + G++ DV ++ DP T+ S
Sbjct: 28 LSRSPTRSVSSDAENPGNS--LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRES 85
Query: 394 KGFGFITYSQAHMVDEAQNNRPHKI-DGRIV 483
+GFGFI+ + + H + GR++
Sbjct: 86 RGFGFISMKSVGDANRCIRSLDHSVLQGRVI 116
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 52.4 bits (120), Expect = 2e-07
Identities = 19/57 (33%), Positives = 37/57 (64%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 444
+ F+GGL + T D L+ + Q+G+++D ++ D ++ RS+GFGF+T+ + +A
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDA 63
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 547 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVV 642
+ FV GL +EDL+ FS FG+++ ++
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKII 38
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 52.4 bits (120), Expect = 2e-07
Identities = 21/79 (26%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QN 450
++F+GGL + T+ L+ ++++G+I + +M T R +GFGFIT++ D+A ++
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 451 NRPHKIDGRIVEPKRAVPR 507
++ +++ +A P+
Sbjct: 73 MHGRELGNKVISVNKAEPK 91
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 52.4 bits (120), Expect = 2e-07
Identities = 21/79 (26%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QN 450
++F+GGL + T+ L+ ++++G+I + +M T R +GFGFIT++ D+A ++
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 451 NRPHKIDGRIVEPKRAVPR 507
++ +++ +A P+
Sbjct: 73 MHGRELGNKVISVNKAEPK 91
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 52.0 bits (119), Expect = 3e-07
Identities = 38/129 (29%), Positives = 69/129 (53%), Gaps = 7/129 (5%)
Frame = +1
Query: 277 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNR 456
+FI LD + +L E + +G I+ V D T RSKG+GF+ + + +E+
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEK----EESAQAA 192
Query: 457 PHKIDGRIVEPKRA-----VPREEIKRPEASATVK--KLFVAGLKQDIEEEDLREYFSTF 615
K++G ++ K+ + R+E R E + T + ++V L ++I E++LR+ F F
Sbjct: 193 IDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKF 252
Query: 616 GNIVSVSVV 642
G ++S +VV
Sbjct: 253 G-VISSAVV 260
Score = 44.0 bits (99), Expect = 9e-05
Identities = 28/103 (27%), Positives = 44/103 (42%)
Frame = +1
Query: 256 EPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMV 435
E L++ LD D LKE + ++G + VM +P+ S+GFGF+ YS
Sbjct: 327 EKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGM-SRGFGFVAYSNPEEA 385
Query: 436 DEAQNNRPHKIDGRIVEPKRAVPREEIKRPEASATVKKLFVAG 564
A + K+ GR R+E +R A ++ G
Sbjct: 386 LRALSEMNGKMIGRKPLYIALAQRKEDRRAHLQALFSQIRAPG 428
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 51.6 bits (118), Expect = 4e-07
Identities = 30/94 (31%), Positives = 45/94 (47%)
Frame = +1
Query: 271 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 450
R +F+ GL + TT +LK +E +GEI + V+ D T R+KGFGF+ + A
Sbjct: 163 RNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALK 222
Query: 451 NRPHKIDGRIVEPKRAVPREEIKRPEASATVKKL 552
N ++ R V A P K E V+ +
Sbjct: 223 NPEKRMYNRTVSCLPARPFNSGKPREQQQPVESV 256
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 526 EASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVV 642
+ ++ + +FV GL D E+L+ F +G I SVV
Sbjct: 157 DRDSSQRNIFVRGLGWDTTHENLKAAFEVYGEITECSVV 195
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 51.2 bits (117), Expect = 6e-07
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD-EAQN 450
KLF+G L + + L + +E G + V V+ D T RS+GFGF+T S V+ AQ
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 451 NRPHKIDGR 477
+++DGR
Sbjct: 152 FNGYELDGR 160
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QN 450
++++G L + D +L+ + + G++V+ V+ D + RSKGFGF+TY + V A ++
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
Query: 451 NRPHKIDGRIVEPKRAVPR 507
+DGR + A R
Sbjct: 265 LDGADLDGRQIRVSEAEAR 283
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 50.8 bits (116), Expect = 8e-07
Identities = 20/50 (40%), Positives = 34/50 (68%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ 423
KLFIGGL + + SLK+ + +GE+ +V + D + RS+GFGF+ +++
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAE 91
Score = 34.7 bits (76), Expect = 0.053
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +1
Query: 547 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSV 639
KLF+ GL ++E+ L++ FS+FG + V +
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRI 72
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 50.4 bits (115), Expect = 1e-06
Identities = 34/126 (26%), Positives = 68/126 (53%), Gaps = 5/126 (3%)
Frame = +1
Query: 277 LFIGGLDYRTTDSSLKEFYEQWGEIVD--VVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 450
+F+ L T++ L++ ++++G IV V ++D K S+G+GF+ + Q ++A +
Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGK---SRGYGFVQFEQ----EDAAH 166
Query: 451 NRPHKIDGRIVEPKRAVPREEIKRPEASATVKK---LFVAGLKQDIEEEDLREYFSTFGN 621
++ IV K + +K+ + +K L++ L D+ E+ LRE F+ FG
Sbjct: 167 AAIQTLNSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGK 226
Query: 622 IVSVSV 639
IVS+++
Sbjct: 227 IVSLAI 232
Score = 48.8 bits (111), Expect = 3e-06
Identities = 34/129 (26%), Positives = 63/129 (48%), Gaps = 3/129 (2%)
Frame = +1
Query: 268 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFG---FITYSQAHMVD 438
T L++G L T+ L + + ++ + V + KD + RS +G F++ A++
Sbjct: 23 TASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAI 82
Query: 439 EAQNNRPHKIDGRIVEPKRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFG 618
E +NN ++G+++ +V + +R V +FV L + + L++ F FG
Sbjct: 83 EKKNNS--LLNGKMIRVMWSVRAPDARRNG----VGNVFVKNLPESVTNAVLQDMFKKFG 136
Query: 619 NIVSVSVVT 645
NIVS V T
Sbjct: 137 NIVSCKVAT 145
Score = 42.3 bits (95), Expect = 3e-04
Identities = 33/146 (22%), Positives = 65/146 (44%), Gaps = 13/146 (8%)
Frame = +1
Query: 244 DDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ 423
D + E L++ LD ++ L+E + ++G+IV + + KD + + +G+ F+ +
Sbjct: 192 DRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKD-ENRLCRGYAFVNFDN 250
Query: 424 AHMVDEAQNN-RPHKIDGRIVEPKRA---VPREEIKRPEAS---------ATVKKLFVAG 564
A K + + RA RE++ R + A V ++V
Sbjct: 251 PEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKN 310
Query: 565 LKQDIEEEDLREYFSTFGNIVSVSVV 642
+ + EE+LR++FS G I S ++
Sbjct: 311 VNVAVTEEELRKHFSQCGTITSTKLM 336
Score = 35.9 bits (79), Expect = 0.023
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +1
Query: 277 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYS 420
+++ ++ T+ L++ + Q G I +M D K K SKGFGF+ +S
Sbjct: 306 IYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGK-SKGFGFVCFS 352
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 49.6 bits (113), Expect = 2e-06
Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 5/106 (4%)
Frame = +1
Query: 220 NMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKG 399
N P+ +GD Y + LF+ L+Y +++S +K +E +G I V ++ D T + KG
Sbjct: 127 NNDPNATGDPY------KTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKG 180
Query: 400 FGFITYSQAHMVDEAQNNRP-HKIDGR----IVEPKRAVPREEIKR 522
+ FI Y + A KIDGR VE R VP +R
Sbjct: 181 YAFIEYMHTRDMKAAYKQADGQKIDGRRVLVDVERGRTVPNWRPRR 226
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/74 (29%), Positives = 42/74 (56%)
Frame = +1
Query: 232 SESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 411
S+ + + +++ +++GG+ + T+ L + Q+GEIVDV +++D T +SKGF F+
Sbjct: 23 SDEASWHAKYKNSAYVYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFL 82
Query: 412 TYSQAHMVDEAQNN 453
Y A +N
Sbjct: 83 AYEDQRSTILAVDN 96
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/71 (33%), Positives = 37/71 (52%)
Frame = +1
Query: 271 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 450
R +F+ G + TT +LK +E +GEI + V+ D T R KG+GF+ + EA
Sbjct: 408 RNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALK 467
Query: 451 NRPHKIDGRIV 483
++ RIV
Sbjct: 468 RPEKRMYNRIV 478
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 544 KKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVV 642
+ +FV G D +E+L+ F ++G I SVV
Sbjct: 408 RNIFVRGFGWDTTQENLKTAFESYGEIEECSVV 440
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 49.2 bits (112), Expect = 2e-06
Identities = 30/136 (22%), Positives = 65/136 (47%)
Frame = +1
Query: 235 ESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIT 414
E + E E + KLF+G + ++S L ++++ + +V ++KD T+ S+G F+
Sbjct: 6 EENREKNEEEESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLL 65
Query: 415 YSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDL 594
D+ N +K + + ++ + + E KLFV L +++ E ++
Sbjct: 66 CPSREEADKLVNACHNK---KTLPGANSLLQVKYADGELERLEHKLFVGMLPKNVSEAEV 122
Query: 595 REYFSTFGNIVSVSVV 642
+ FS +G I + ++
Sbjct: 123 QSLFSKYGTIKDLQIL 138
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 49.2 bits (112), Expect = 2e-06
Identities = 30/136 (22%), Positives = 65/136 (47%)
Frame = +1
Query: 235 ESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIT 414
E + E E + KLF+G + ++S L ++++ + +V ++KD T+ S+G F+
Sbjct: 6 EENREKNEEEESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLL 65
Query: 415 YSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDL 594
D+ N +K + + ++ + + E KLFV L +++ E ++
Sbjct: 66 CPSREEADKLVNACHNK---KTLPGANSLLQVKYADGELERLEHKLFVGMLPKNVSEAEV 122
Query: 595 REYFSTFGNIVSVSVV 642
+ FS +G I + ++
Sbjct: 123 QSLFSKYGTIKDLQIL 138
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 49.2 bits (112), Expect = 2e-06
Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Frame = +1
Query: 247 DYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQA 426
D ++ + F+GGL + T + S++ + ++GE+ D ++ D +T RSKGF F+T+
Sbjct: 36 DVAYADNEYRCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDE 95
Query: 427 HMVDEA-QNNRPHKIDGR 477
+ A ++DGR
Sbjct: 96 DSMRTAIDRMNGQELDGR 113
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 48.8 bits (111), Expect = 3e-06
Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 14/143 (9%)
Frame = +1
Query: 253 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQ-WGEIVDVVVMKDPKTKRSKGFGFITY---- 417
E PEHT +F+G L TD L E ++ + + V+ D T RSKG+GF+ +
Sbjct: 169 EGPEHT--VFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADES 226
Query: 418 ----SQAHMVDEAQNNRPHKI-DGRIVEPKRAVP----REEIKRPEASATVKKLFVAGLK 570
+ M + ++RP + +P P + E+ T +FV +
Sbjct: 227 EQIRAMTEMNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTTIFVGAVD 286
Query: 571 QDIEEEDLREYFSTFGNIVSVSV 639
Q + E+DL+ F FG +V V +
Sbjct: 287 QSVTEDDLKSVFGQFGELVHVKI 309
Score = 35.9 bits (79), Expect = 0.023
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Frame = +1
Query: 217 LNMKPSE----SGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKT 384
L M+P+ G+ E +F+G +D T+ LK + Q+GE+V V K P
Sbjct: 256 LTMQPASYQNTQGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHV---KIPAG 312
Query: 385 KRSKGFGFITYSQAHMVDEA 444
KR GF+ Y+ ++A
Sbjct: 313 KRC---GFVQYANRACAEQA 329
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 48.4 bits (110), Expect = 4e-06
Identities = 24/73 (32%), Positives = 42/73 (57%)
Frame = +1
Query: 268 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ 447
T L + + +RTT L + ++G++VDV + +D +T S+GF F+ Y DEA
Sbjct: 15 TYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYK---DEA- 70
Query: 448 NNRPHKIDGRIVE 486
+ ++DGR+V+
Sbjct: 71 HKAVERLDGRVVD 83
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 48.4 bits (110), Expect = 4e-06
Identities = 24/73 (32%), Positives = 42/73 (57%)
Frame = +1
Query: 268 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ 447
T L + + +RTT L + ++G++VDV + +D +T S+GF F+ Y DEA
Sbjct: 15 TYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYK---DEA- 70
Query: 448 NNRPHKIDGRIVE 486
+ ++DGR+V+
Sbjct: 71 HKAVERLDGRVVD 83
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 48.4 bits (110), Expect = 4e-06
Identities = 42/151 (27%), Positives = 68/151 (45%), Gaps = 30/151 (19%)
Frame = +1
Query: 277 LFIGGLDYRTTDSSLKE-FYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ-- 447
+F+G L TD L E F +++ + V+ D T RSKG+GF+ + + A
Sbjct: 204 VFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTE 263
Query: 448 ------NNRPHKIDGRIVEPKRAVPREEIKRPEA---------------------SATVK 546
+NR ++ I PKRA+ ++ +A +T
Sbjct: 264 MNGAYCSNRQMRVG--IATPKRAIANQQQHSSQAVILAGGHGSNGSMGYGSQSDGESTNA 321
Query: 547 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSV 639
+FV G+ D+ +EDLR+ FS FG +VSV +
Sbjct: 322 TIFVGGIDPDVIDEDLRQPFSQFGEVVSVKI 352
Score = 39.9 bits (89), Expect = 0.001
Identities = 31/131 (23%), Positives = 58/131 (44%), Gaps = 4/131 (3%)
Frame = +1
Query: 262 EHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDE 441
+ + L++G L + ++ L + GE+ V V+++ T +S+G+GF+ + +E
Sbjct: 105 DDVKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEE 164
Query: 442 AQNNRPHKIDGRIVEPKR---AVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFS- 609
N + +P R A KR + +FV L D+ + L E FS
Sbjct: 165 VLQNYSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFSD 224
Query: 610 TFGNIVSVSVV 642
+ ++ S VV
Sbjct: 225 RYPSVKSAKVV 235
Score = 35.1 bits (77), Expect = 0.040
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = +1
Query: 277 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 444
+F+GG+D D L++ + Q+GE+V V K KG GF+ ++ ++A
Sbjct: 323 IFVGGIDPDVIDEDLRQPFSQFGEVVSV------KIPVGKGCGFVQFADRKSAEDA 372
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 48.4 bits (110), Expect = 4e-06
Identities = 34/151 (22%), Positives = 71/151 (47%), Gaps = 13/151 (8%)
Frame = +1
Query: 226 KPSESGDDYEEPEHT-RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGF 402
K + + +PE R +F + R T+ + EF+ + G++ DV ++ D ++RS+G
Sbjct: 166 KKEDKVEPEADPERDQRTVFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGI 225
Query: 403 GFITY------------SQAHMVDEAQNNRPHKIDGRIVEPKRAVPREEIKRPEASATVK 546
G++ + S ++ + +P + + +V+ A S +
Sbjct: 226 GYVEFYDTMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSGGAR 285
Query: 547 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSV 639
+L+V L ++ E+DLR+ F +FG++ V V
Sbjct: 286 RLYVGNLHINMSEDDLRKVFESFGSVELVQV 316
Score = 45.2 bits (102), Expect = 4e-05
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Frame = +1
Query: 271 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 450
R+L++G L ++ L++ +E +G + V V +D +T KGFGF+ +++ A N
Sbjct: 285 RRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRD-ETGLCKGFGFVQFARLEDARNALN 343
Query: 451 -NRPHKIDGRIVEPKRAVPREEIKRPEASAT 540
N +I GR ++ + E+ PEA T
Sbjct: 344 LNGQLEIAGRAIKVSAVTDQTEV--PEAGQT 372
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 47.6 bits (108), Expect = 7e-06
Identities = 18/57 (31%), Positives = 35/57 (61%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 444
++F+G LD ++ LK+ + GE+ +V ++K+P+TK+SKG F+ ++ A
Sbjct: 215 EIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRA 271
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 47.6 bits (108), Expect = 7e-06
Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Frame = +1
Query: 277 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNN 453
LF+ G+ + +T+ +L + + Q+G+++ V V+ D R KGF ++T+S ++A
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLEL 82
Query: 454 RPHKIDGRIV 483
+DGR+V
Sbjct: 83 NAQLVDGRVV 92
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 47.6 bits (108), Expect = 7e-06
Identities = 24/69 (34%), Positives = 37/69 (53%)
Frame = +1
Query: 271 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 450
RK+F+ GL + TT +L +E +GEI + V+ D T ++KGFGF+ + EA
Sbjct: 104 RKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALK 163
Query: 451 NRPHKIDGR 477
+I R
Sbjct: 164 EPKKRILNR 172
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 47.6 bits (108), Expect = 7e-06
Identities = 24/69 (34%), Positives = 37/69 (53%)
Frame = +1
Query: 271 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 450
RK+F+ GL + TT +L +E +GEI + V+ D T ++KGFGF+ + EA
Sbjct: 104 RKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALK 163
Query: 451 NRPHKIDGR 477
+I R
Sbjct: 164 EPKKRILNR 172
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 47.2 bits (107), Expect = 9e-06
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Frame = +1
Query: 271 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ- 447
RKL++G L + ++ L++ +E +G + V + DP+T + KGFGFI + Q AQ
Sbjct: 265 RKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQI 324
Query: 448 -NNRPHKIDGRIVE 486
N +I GR ++
Sbjct: 325 ALNGKLEIAGRTIK 338
Score = 45.6 bits (103), Expect = 3e-05
Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 8/136 (5%)
Frame = +1
Query: 256 EPEHT-RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHM 432
+PE R +F + + T+ + EF+ + G++ DV ++ D ++RSKG G+I +
Sbjct: 162 DPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMS 221
Query: 433 VDEAQNNRPHKIDGRIVEPKRAVPREEIKRPEASATV-------KKLFVAGLKQDIEEED 591
V A G+ V K + + + + S TV +KL+V L ++ E
Sbjct: 222 VPMAIALSGQLFLGQPVMVKPSEAEKNLAQSN-STTVGGTGPADRKLYVGNLHFNMSELQ 280
Query: 592 LREYFSTFGNIVSVSV 639
LR+ F FG + V +
Sbjct: 281 LRQIFEAFGPVELVQL 296
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 47.2 bits (107), Expect = 9e-06
Identities = 25/76 (32%), Positives = 41/76 (53%)
Frame = +1
Query: 217 LNMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSK 396
+ + P SG E P+ ++F+GGL Y T+S ++E E +G + ++KD +T SK
Sbjct: 345 VGLTPGASGG-LEGPD---RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSK 400
Query: 397 GFGFITYSQAHMVDEA 444
G+ F Y + D A
Sbjct: 401 GYAFCVYQDLSVTDIA 416
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 47.2 bits (107), Expect = 9e-06
Identities = 25/76 (32%), Positives = 41/76 (53%)
Frame = +1
Query: 217 LNMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSK 396
+ + P SG E P+ ++F+GGL Y T+S ++E E +G + ++KD +T SK
Sbjct: 345 VGLTPGASGG-LEGPD---RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSK 400
Query: 397 GFGFITYSQAHMVDEA 444
G+ F Y + D A
Sbjct: 401 GYAFCVYQDLSVTDIA 416
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 47.2 bits (107), Expect = 9e-06
Identities = 25/76 (32%), Positives = 41/76 (53%)
Frame = +1
Query: 217 LNMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSK 396
+ + P SG E P+ ++F+GGL Y T+S ++E E +G + ++KD +T SK
Sbjct: 345 VGLTPGASGG-LEGPD---RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSK 400
Query: 397 GFGFITYSQAHMVDEA 444
G+ F Y + D A
Sbjct: 401 GYAFCVYQDLSVTDIA 416
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 47.2 bits (107), Expect = 9e-06
Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 1/121 (0%)
Frame = +1
Query: 259 PEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD 438
P H ++FIGGL + L++ E+ GEI +V +MKD + SKG+ F+ + +
Sbjct: 112 PPHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQ 171
Query: 439 EA-QNNRPHKIDGRIVEPKRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTF 615
+A + + G+ + R S T +LF+ + ++ E++ R+
Sbjct: 172 KAIEELHSKEFKGKTI------------RCSLSETKNRLFIGNIPKNWTEDEFRKVIEDV 219
Query: 616 G 618
G
Sbjct: 220 G 220
Score = 39.9 bits (89), Expect = 0.001
Identities = 23/103 (22%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
Frame = +1
Query: 229 PSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGF 408
P S + + L++ + T+ LKE +++ GE+ +V KR FGF
Sbjct: 278 PKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGGKRD--FGF 335
Query: 409 ITYSQ-AHMVDEAQNNRPHKIDGRIVEPKRAVPREEIKRPEAS 534
+ Y++ + + ++ ++++G+ +E A P+ E K +S
Sbjct: 336 VHYAERSSALKAVKDTERYEVNGQPLEVVLAKPQAERKHDPSS 378
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 46.8 bits (106), Expect = 1e-05
Identities = 43/172 (25%), Positives = 75/172 (43%), Gaps = 31/172 (18%)
Frame = +1
Query: 217 LNMKPSESGDDYEE-PEHTRKLFIGGLDYRTTDSSLKE-FYEQWGEIVDVVVMKDPKTKR 390
LN SG + P+H+ +F+G L TD L+E F + + V+ DP T R
Sbjct: 99 LNWASFGSGQKVDAGPDHS--IFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGR 156
Query: 391 SKGFGFITYSQAHMVDEAQ--------NNRPHKIDGRIVEPKRAVPREEIKR-------- 522
SKG+GF+ +++ + A + RP +I + V ++ + +
Sbjct: 157 SKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKNVGVQQQYVTKAVYPVTVP 216
Query: 523 -------------PEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSV 639
PE+ T + VA L Q++ EE+L++ FS G ++ V +
Sbjct: 217 SAVAAPVQAYVAPPESDVTCTTISVANLDQNVTEEELKKAFSQLGEVIYVKI 268
Score = 41.5 bits (93), Expect = 5e-04
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Frame = +1
Query: 229 PSESGDDYEEP---EHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKG 399
P Y P E R L+IG L Y ++ L + Q GE+V V V+++ T + +G
Sbjct: 7 PQPPQGSYHHPQTLEEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEG 66
Query: 400 FGFITY 417
+GFI +
Sbjct: 67 YGFIEF 72
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 46.8 bits (106), Expect = 1e-05
Identities = 35/139 (25%), Positives = 66/139 (47%), Gaps = 12/139 (8%)
Frame = +1
Query: 262 EHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDE 441
+ + +++ L TD L + Q+G + VVVM+D RS+GFGF+ + +
Sbjct: 199 QDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRD-GMGRSRGFGFVNFCNPENAKK 257
Query: 442 AQNNR-PHKIDGRIVEPKRAVPREE----IKRPEASATVKK-------LFVAGLKQDIEE 585
A + ++ + + +A+ ++E +K+ + + K L+V L + + E
Sbjct: 258 AMESLCGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNMRWSNLYVKNLSESMNE 317
Query: 586 EDLREYFSTFGNIVSVSVV 642
LRE F +G IVS V+
Sbjct: 318 TRLREIFGCYGQIVSAKVM 336
Score = 38.3 bits (85), Expect = 0.004
Identities = 26/99 (26%), Positives = 48/99 (48%)
Frame = +1
Query: 277 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNR 456
L++ L ++ L+E + +G+IV VM + RSKGFGF+ +S E
Sbjct: 306 LYVKNLSESMNETRLREIFGCYGQIVSAKVMCH-ENGRSKGFGFVCFSNC----EESKQA 360
Query: 457 PHKIDGRIVEPKRAVPREEIKRPEASATVKKLFVAGLKQ 573
++G +V+ K V R ++ + +++ F A +Q
Sbjct: 361 KRYLNGFLVDGKPIVVRVAERKEDRIKRLQQYFQAQPRQ 399
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 46.8 bits (106), Expect = 1e-05
Identities = 43/157 (27%), Positives = 69/157 (43%), Gaps = 16/157 (10%)
Frame = +1
Query: 217 LNMKPSESGDDYEE-PEHTRKLFIGGLDYRTTDSSLKE-FYEQWGEIVDVVVMKDPKTKR 390
LN SGD ++ P++T +F+G L TD L E F + + V+ D T R
Sbjct: 138 LNWASLSSGDKRDDSPDYT--IFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGR 195
Query: 391 SKGFGFITYS----QAHMVDEAQ----NNRPHKIDGRIVEPKRAVPREEIKRPEASATVK 546
+KG+GF+ +S Q + E + RP +I + R+ + A T
Sbjct: 196 TKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTD 255
Query: 547 K------LFVAGLKQDIEEEDLREYFSTFGNIVSVSV 639
+FV GL + ++ L+ FS +G IV V +
Sbjct: 256 NDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKI 292
Score = 43.6 bits (98), Expect = 1e-04
Identities = 26/63 (41%), Positives = 36/63 (57%)
Frame = +1
Query: 256 EPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMV 435
+P +T +F+GGLD TD LK + Q+GEIV V K P KR GF+ +S+
Sbjct: 257 DPNNTT-VFVGGLDASVTDDHLKNVFSQYGEIVHV---KIPAGKRC---GFVQFSEKSCA 309
Query: 436 DEA 444
+EA
Sbjct: 310 EEA 312
Score = 37.1 bits (82), Expect = 0.010
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Frame = +1
Query: 262 EHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI---TYSQAHM 432
+ R L+IG L Y ++ L + GE+V V+++ +T + +G+GFI +++ A
Sbjct: 59 DEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAER 118
Query: 433 VDEAQNNRP 459
V + NN P
Sbjct: 119 VLQTFNNAP 127
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 46.8 bits (106), Expect = 1e-05
Identities = 43/157 (27%), Positives = 69/157 (43%), Gaps = 16/157 (10%)
Frame = +1
Query: 217 LNMKPSESGDDYEE-PEHTRKLFIGGLDYRTTDSSLKE-FYEQWGEIVDVVVMKDPKTKR 390
LN SGD ++ P++T +F+G L TD L E F + + V+ D T R
Sbjct: 138 LNWASLSSGDKRDDSPDYT--IFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGR 195
Query: 391 SKGFGFITYS----QAHMVDEAQ----NNRPHKIDGRIVEPKRAVPREEIKRPEASATVK 546
+KG+GF+ +S Q + E + RP +I + R+ + A T
Sbjct: 196 TKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTD 255
Query: 547 K------LFVAGLKQDIEEEDLREYFSTFGNIVSVSV 639
+FV GL + ++ L+ FS +G IV V +
Sbjct: 256 NDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKI 292
Score = 40.3 bits (90), Expect = 0.001
Identities = 24/56 (42%), Positives = 33/56 (58%)
Frame = +1
Query: 256 EPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ 423
+P +T +F+GGLD TD LK + Q+GEIV V K P KR GF+ +S+
Sbjct: 257 DPNNTT-VFVGGLDASVTDDHLKNVFSQYGEIVHV---KIPAGKRC---GFVQFSE 305
Score = 37.1 bits (82), Expect = 0.010
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Frame = +1
Query: 262 EHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI---TYSQAHM 432
+ R L+IG L Y ++ L + GE+V V+++ +T + +G+GFI +++ A
Sbjct: 59 DEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAER 118
Query: 433 VDEAQNNRP 459
V + NN P
Sbjct: 119 VLQTFNNAP 127
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 46.4 bits (105), Expect = 2e-05
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Frame = +1
Query: 238 SGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 417
SGD + LF+G L + TT+ +L+E ++G I ++ +++ T S+G+GF+ Y
Sbjct: 53 SGDSKAVGDPYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEY 112
Query: 418 SQAHMVDEAQNNRPHK-IDGR 477
+ A + H IDGR
Sbjct: 113 ETEKEMLRAYEDAHHSLIDGR 133
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 46.0 bits (104), Expect = 2e-05
Identities = 34/144 (23%), Positives = 65/144 (45%), Gaps = 15/144 (10%)
Frame = +1
Query: 253 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQ-WGEIVDVVVMKDPKTKRSKGFGFITY---- 417
E P+HT +F+G L TD L + ++ +G + V+ D T RSKG+GF+ +
Sbjct: 150 EGPDHT--IFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADEN 207
Query: 418 ----SQAHMVDEAQNNRPHKI------DGRIVEPKRAVPREEIKRPEASATVKKLFVAGL 567
+ M + + RP +I + ++P + + +FV GL
Sbjct: 208 EQMRAMTEMNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGL 267
Query: 568 KQDIEEEDLREYFSTFGNIVSVSV 639
++ +++L+ F FG ++ V +
Sbjct: 268 DANVTDDELKSIFGQFGELLHVKI 291
Score = 41.9 bits (94), Expect = 4e-04
Identities = 29/86 (33%), Positives = 45/86 (52%)
Frame = +1
Query: 187 NILGLQV**ILNMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVV 366
N L +Q N + + +GD+ +P +T +F+GGLD TD LK + Q+GE++ V
Sbjct: 235 NALPMQPAMYQNTQGANAGDN--DPNNTT-IFVGGLDANVTDDELKSIFGQFGELLHV-- 289
Query: 367 MKDPKTKRSKGFGFITYSQAHMVDEA 444
K P KR GF+ Y+ + A
Sbjct: 290 -KIPPGKRC---GFVQYANKASAEHA 311
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 45.6 bits (103), Expect = 3e-05
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +1
Query: 277 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNN 453
L+IG L D L + +GEIV V+KD T SKG+GF+ Y+ M + A Q
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAM 541
Query: 454 RPHKIDGR 477
++ +GR
Sbjct: 542 NGYRFEGR 549
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 45.6 bits (103), Expect = 3e-05
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +1
Query: 277 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNN 453
L+IG L D L + +GEIV V+KD T SKG+GF+ Y+ M + A Q
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAM 541
Query: 454 RPHKIDGR 477
++ +GR
Sbjct: 542 NGYRFEGR 549
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 45.6 bits (103), Expect = 3e-05
Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 10/122 (8%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY------SQAHMV 435
KL++GG+ Y++T+ ++ ++ G I+ V P+ G FIT+ +A
Sbjct: 162 KLYVGGIPYQSTEDEIRSYFRSCGVIIKVDCKMRPEDGAFSGIAFITFDTEDGAKRALAF 221
Query: 436 DE-AQNNRPHKIDGRIVEPKRAVPREEIK---RPEASATVKKLFVAGLKQDIEEEDLREY 603
D A +R I + ++PR + PE ++++ L D E D+R+
Sbjct: 222 DRAAMGDRYLTIQQYVKTTTPSIPRRKTSSGFAPEMVDGYNRVYIGNLAWDTTERDIRKL 281
Query: 604 FS 609
FS
Sbjct: 282 FS 283
Score = 33.9 bits (74), Expect = 0.093
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Frame = +1
Query: 448 NNRPHKIDGRIVEPKRAVPREEIK---RPEASATVKKLFVAGLKQDIEEEDLREYFSTFG 618
N P K + VE K V E+ + E KL+V G+ E+++R YF + G
Sbjct: 126 NKTPKKAEEGNVEEKVKVEEIEVNTDNKEEDGVVPNKLYVGGIPYQSTEDEIRSYFRSCG 185
Query: 619 NIVSV 633
I+ V
Sbjct: 186 VIIKV 190
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 45.6 bits (103), Expect = 3e-05
Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 17/141 (12%)
Frame = +1
Query: 268 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ 447
++ LF L + + ++ F+++ GE+VDV + +GFG + ++ + +A
Sbjct: 296 SKTLFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKAL 355
Query: 448 NNRPHKIDGRIVEPKRAVPR-EEIKRPEAS------------ATVKKLFVAGLKQDIEEE 588
+ GR + A R E +RP + KK+FV G + E+
Sbjct: 356 EFHGRPLLGREIRLDIAQERGERGERPAFTPQSGNFRSGGDGGDEKKIFVKGFDASLSED 415
Query: 589 D----LREYFSTFGNIVSVSV 639
D LRE+FS+ G I +VSV
Sbjct: 416 DIKNTLREHFSSCGEIKNVSV 436
Score = 33.1 bits (72), Expect = 0.16
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Frame = +1
Query: 271 RKLFIGGLDYRTTD----SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ 423
+K+F+ G D ++ ++L+E + GEI +V V D T SKG ++ +S+
Sbjct: 401 KKIFVKGFDASLSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFSE 455
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 45.6 bits (103), Expect = 3e-05
Identities = 25/90 (27%), Positives = 47/90 (52%)
Frame = +1
Query: 262 EHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDE 441
E K+++G L + T L+ + ++G IV V+ D KT R++ F F++++ D
Sbjct: 209 ESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDA 268
Query: 442 AQNNRPHKIDGRIVEPKRAVPREEIKRPEA 531
A + +G E +R + RE I++ E+
Sbjct: 269 ALS-----FNGTQYEGRRIIVREGIEKSES 293
Score = 39.9 bits (89), Expect = 0.001
Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 13/123 (10%)
Frame = +1
Query: 313 SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-QNNRPHKIDGRIVEP 489
+ L + ++ +G ++ V V ++P+T S+G G++T + A + ++ GR +
Sbjct: 122 AQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRV 181
Query: 490 KRAVPREEIKR--PEA-SATVKKL---------FVAGLKQDIEEEDLREYFSTFGNIVSV 633
+ +V R PE ++T KK+ +V L + + LR +FS FG IVS
Sbjct: 182 RYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVST 241
Query: 634 SVV 642
V+
Sbjct: 242 RVL 244
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 45.2 bits (102), Expect = 4e-05
Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 9/135 (6%)
Frame = +1
Query: 268 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ 447
++ LF G L Y+ S ++ F+++ GE+VD V + KG+G I ++ +A
Sbjct: 383 SKTLFAGNLSYQIARSDIENFFKEAGEVVD-VRLSSFDDGSFKGYGHIEFASPEEAQKAL 441
Query: 448 NNRPHKIDGRIVE----PKRAVPREEIK-RPEASATVKKLFVAGLKQDIEEE----DLRE 600
+ GR V +R PR R + + ++V G + E+ +LR
Sbjct: 442 EMNGKLLLGRDVRLDLANERGTPRNSNPGRKGEGSQSRTIYVRGFSSSLGEDEIKKELRS 501
Query: 601 YFSTFGNIVSVSVVT 645
+FS G + V V T
Sbjct: 502 HFSKCGEVTRVHVPT 516
Score = 31.9 bits (69), Expect = 0.37
Identities = 23/97 (23%), Positives = 39/97 (40%)
Frame = +1
Query: 220 NMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKG 399
N P G+ + + F L L+ + + GE+ V V D +T S+G
Sbjct: 466 NSNPGRKGEGSQSRTIYVRGFSSSLGEDEIKKELRSHFSKCGEVTRVHVPTDRETGASRG 525
Query: 400 FGFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPRE 510
F +I + DEA +I G + + + PR+
Sbjct: 526 FAYIDLTSG--FDEALQLSGSEIGGGNIHVEESRPRD 560
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 44.8 bits (101), Expect = 5e-05
Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Frame = +1
Query: 277 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNR 456
+++GGL Y T+ +++ + +G ++ V ++ D ++ R K +GF+T+S D+A +
Sbjct: 9 VYVGGLPYDITEEAVRRVFSIYGSVLTVKIVND-RSVRGKCYGFVTFSNRRSADDAIEDM 67
Query: 457 PHK-IDGRIV 483
K I GR V
Sbjct: 68 DGKSIGGRAV 77
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 44.8 bits (101), Expect = 5e-05
Identities = 20/60 (33%), Positives = 35/60 (58%)
Frame = +1
Query: 241 GDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYS 420
G + E P T L++ GL R TD L+ + + G++ ++ +P+T+ S+GF F+T S
Sbjct: 63 GSEVENPGTT--LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMS 120
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 44.8 bits (101), Expect = 5e-05
Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 5/112 (4%)
Frame = +1
Query: 268 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY----SQAHMV 435
T +LF+ L Y T+ L E + +G+I +V ++ D +TKRS+G +I Y A +
Sbjct: 260 TGRLFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARAM 319
Query: 436 DEAQNNRPHKIDGRIVEPKRAVPRE-EIKRPEASATVKKLFVAGLKQDIEEE 588
+E N+ GR++ A RE K+ ++ + K F KQ EE+
Sbjct: 320 EELDNS---SFQGRLLHILPAKHRETSDKQVNDTSNLPKTF----KQKREEQ 364
Score = 33.9 bits (74), Expect = 0.093
Identities = 20/58 (34%), Positives = 30/58 (51%)
Frame = +1
Query: 469 DGRIVEPKRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVV 642
DG++ + +AV + + +LFV L EE+L E+FSTFG I V +V
Sbjct: 243 DGKVAQESKAVSDDVLD-------TGRLFVRNLPYTATEEELMEHFSTFGKISEVHLV 293
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 44.8 bits (101), Expect = 5e-05
Identities = 18/62 (29%), Positives = 34/62 (54%)
Frame = +1
Query: 259 PEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD 438
P H ++++GG+ T+ LK F GE+ +V +M++ + KG+ F+T+ +
Sbjct: 88 PPHGSEVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAA 147
Query: 439 EA 444
EA
Sbjct: 148 EA 149
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 44.4 bits (100), Expect = 7e-05
Identities = 19/57 (33%), Positives = 32/57 (56%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 444
K+++G L T L+ + + G++V V + P T +S GFGF+T+S V+ A
Sbjct: 178 KVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAA 234
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 44.4 bits (100), Expect = 7e-05
Identities = 19/57 (33%), Positives = 32/57 (56%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 444
++F+GGL Y T+ ++E E +G + ++KD +T SKG+ F Y + D A
Sbjct: 376 RIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIA 432
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 44.0 bits (99), Expect = 9e-05
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYS---QAHMVDEA 444
K+ + L + T++ LK + +GEI +V ++KD KRSKG+ FI ++ A + E
Sbjct: 41 KIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIET 100
Query: 445 QNNRPHKIDGRIV 483
+ R + +GR++
Sbjct: 101 MDRRMY--NGRMI 111
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 44.0 bits (99), Expect = 9e-05
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Frame = +1
Query: 271 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 450
R +F+G + Y T+ L+E + G +V ++ D +T + KG+GF Y A+
Sbjct: 9 RCVFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARR 68
Query: 451 N-RPHKIDGR 477
N + ++I+GR
Sbjct: 69 NLQSYEINGR 78
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 44.0 bits (99), Expect = 9e-05
Identities = 39/144 (27%), Positives = 61/144 (42%), Gaps = 23/144 (15%)
Frame = +1
Query: 277 LFIGGLDYRTTDSSLKE-FYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 453
+F+G L +D+ L E F ++ + V+ D T RSKG+GF+ + + A
Sbjct: 215 IFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTE 274
Query: 454 R------PHKIDGRIVEPKRAVPREEIKRPEA----------------SATVKKLFVAGL 567
++ I PKRA + +A + +FV GL
Sbjct: 275 MNGAFCSSRQMRVGIATPKRAAAYGQQNGSQALTLAGGHGGNGSMSDGESNNSTIFVGGL 334
Query: 568 KQDIEEEDLREYFSTFGNIVSVSV 639
D+ EEDL + FS FG +VSV +
Sbjct: 335 DADVTEEDLMQPFSDFGEVVSVKI 358
Score = 37.1 bits (82), Expect = 0.010
Identities = 20/67 (29%), Positives = 33/67 (49%)
Frame = +1
Query: 277 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNR 456
+F+GGLD T+ L + + +GE+V V K KG GF+ ++ +EA N
Sbjct: 329 IFVGGLDADVTEEDLMQPFSDFGEVVSV------KIPVGKGCGFVQFANRQSAEEAIGNL 382
Query: 457 PHKIDGR 477
+ G+
Sbjct: 383 NGTVIGK 389
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/91 (26%), Positives = 45/91 (49%)
Frame = +1
Query: 277 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNR 456
L++ LD+ T+S + + +G++ V V+KD T++S+G F+ Y D A+ R
Sbjct: 59 LYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSRE--DAAKAAR 116
Query: 457 PHKIDGRIVEPKRAVPREEIKRPEASATVKK 549
+D +I+ ++ AS +KK
Sbjct: 117 --SMDAKILNGRKLTVSIAADNGRASEFIKK 145
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 550 LFVAGLKQDIEEEDLREYFSTFGNIVSVSVV 642
L+V+ L + D+ FSTFG + V+V+
Sbjct: 59 LYVSNLDFSLTNSDIHTLFSTFGKVARVTVL 89
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 43.6 bits (98), Expect = 1e-04
Identities = 16/55 (29%), Positives = 33/55 (60%)
Frame = +1
Query: 280 FIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 444
F+ GLD T + L + + ++G ++D ++ D T +S+ FGF+T+ + + +A
Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDA 64
Score = 37.5 bits (83), Expect = 0.008
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +1
Query: 553 FVAGLKQDIEEEDLREYFSTFGNIVSVSVV 642
FV GL QD +E+DL + FS FGN++ ++
Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKII 39
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/63 (31%), Positives = 35/63 (55%)
Frame = +1
Query: 232 SESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 411
S + E P T L++ GL R TD L+ + + G++ ++ +P+T+ S+GF F+
Sbjct: 61 SRGRSEVENPGTT--LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFV 118
Query: 412 TYS 420
T S
Sbjct: 119 TMS 121
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 43.2 bits (97), Expect = 2e-04
Identities = 33/132 (25%), Positives = 60/132 (45%), Gaps = 9/132 (6%)
Frame = +1
Query: 271 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-- 444
R +F+G +Y T S L+ ++++G VD V MK G+ F+ + ++A
Sbjct: 2 RPVFVGNFEYETRQSDLERLFDKYGR-VDRVDMK-------SGYAFVYFEDERDAEDAIR 53
Query: 445 -QNNRPHKIDGRIV-----EPKRAVPREEIKRPEASATVKKLFVAGLKQ-DIEEEDLREY 603
+N P + R + + +R PR + K P K LFV +E D+ ++
Sbjct: 54 KLDNFPFGYEKRRLSVEWAKGERGRPRGDAKAPSNLKPTKTLFVINFDPIRTKEHDIEKH 113
Query: 604 FSTFGNIVSVSV 639
F +G + +V +
Sbjct: 114 FEPYGKVTNVRI 125
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 42.7 bits (96), Expect = 2e-04
Identities = 18/48 (37%), Positives = 30/48 (62%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 417
KL+IGGL T + SLK+ + + + + VM + T RS+G+GF+ +
Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNF 79
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/58 (34%), Positives = 31/58 (53%)
Frame = +1
Query: 277 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 450
+F+G L TD++L + + + D VM D KT RS+GFGF+++ A N
Sbjct: 146 IFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIN 203
Score = 31.1 bits (67), Expect = 0.65
Identities = 20/82 (24%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Frame = +1
Query: 253 EEPEHTRK---LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYS- 420
E PE+ + +++G L T L ++ G V+++ + +R KGFGF+ Y+
Sbjct: 256 ETPENNSQFTTVYVGNLAPEVTQLDLHRYFHALG----AGVIEEVRVQRDKGFGFVRYNT 311
Query: 421 --QAHMVDEAQNNRPHKIDGRI 480
+A + + N +P+ + +I
Sbjct: 312 HPEAALAIQMGNTQPYLFNRQI 333
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/58 (34%), Positives = 31/58 (53%)
Frame = +1
Query: 277 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 450
+F+G L TD++L + + + D VM D KT RS+GFGF+++ A N
Sbjct: 150 IFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIN 207
Score = 27.9 bits (59), Expect = 6.1
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = +1
Query: 238 SGDDYEE--PEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 411
S +D E P+ T +++G L T L + G V+++ + +R KGFGF+
Sbjct: 257 SNEDAPENNPQFTT-VYVGNLSPEVTQLDLHRLFYTLG----AGVIEEVRVQRDKGFGFV 311
Query: 412 TYS 420
Y+
Sbjct: 312 RYN 314
>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 173
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/56 (32%), Positives = 31/56 (55%)
Frame = +1
Query: 277 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 444
++IG +D R +D L + Q G ++D+ + +D +T + KGF F Y + D A
Sbjct: 9 VYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEEIADYA 64
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/75 (25%), Positives = 38/75 (50%)
Frame = +1
Query: 253 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHM 432
+E R +F+G +DY T +++ ++ G + V ++ D K + KGF ++ + +
Sbjct: 86 KEEVDARSVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTD-KFGQPKGFAYVEFVEVEA 144
Query: 433 VDEAQNNRPHKIDGR 477
V EA ++ GR
Sbjct: 145 VQEALQLNESELHGR 159
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 41.9 bits (94), Expect = 4e-04
Identities = 31/87 (35%), Positives = 45/87 (51%)
Frame = +1
Query: 289 GLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKI 468
GL TTD SL++ + + ++ KD +T+R KGFGFIT+ D+AQ +
Sbjct: 77 GLSAYTTDQSLRQLFAPFARLI-----KDQQTQRPKGFGFITFESE---DDAQ-KALKAL 127
Query: 469 DGRIVEPKRAVPREEIKRPEASATVKK 549
+G+IV R + E K EA T K
Sbjct: 128 NGKIVN-GRLIFVETAKEVEAPTTSLK 153
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 41.9 bits (94), Expect = 4e-04
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Frame = +1
Query: 277 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNR 456
L++GGL +S L + +G+I DV D ++ + FGF+T+ + A +N
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMDNM 74
Query: 457 P-HKIDGRIVEPKRAVPREEIKRPE 528
++ GR++ A+P E+IK E
Sbjct: 75 DGAELYGRVLTVNYALP-EKIKGGE 98
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 41.1 bits (92), Expect = 6e-04
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Frame = +1
Query: 277 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ---AHMVDEAQ 447
L+IG + + ++ ++ F+ Q+G + V V ++ KT +SK FGFI + A + A
Sbjct: 62 LYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGAM 121
Query: 448 NN---RPHKIDGRIVEPKRAVP 504
N+ H + ++EP+ P
Sbjct: 122 NDYLLMEHMLKVHVIEPENVKP 143
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 40.7 bits (91), Expect = 8e-04
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Frame = +1
Query: 253 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHM 432
+E R +++G +DY T ++ ++ G + V ++ D K + KGF ++ + +
Sbjct: 83 KEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMD-KFGQPKGFAYVEFVEVEA 141
Query: 433 VDEAQNNRPHKIDGR--IVEPKR 495
V EA ++ GR V PKR
Sbjct: 142 VQEALQLNESELHGRQLKVSPKR 164
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 40.7 bits (91), Expect = 8e-04
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Frame = +1
Query: 253 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHM 432
+E R +++G +DY T ++ ++ G + V ++ D K + KGF ++ + +
Sbjct: 83 KEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMD-KFGQPKGFAYVEFVEVEA 141
Query: 433 VDEAQNNRPHKIDGR--IVEPKR 495
V EA ++ GR V PKR
Sbjct: 142 VQEALQLNESELHGRQLKVSPKR 164
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 40.7 bits (91), Expect = 8e-04
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Frame = +1
Query: 235 ESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMK-DPKTKRSKGFGFI 411
E+ + +E K+F+G L +EF+ Q+G I +V+++K + +++ GFGFI
Sbjct: 153 ETRNPQQEFRQEGKIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEVEKNAGFGFI 212
Query: 412 TYSQAHMVDEAQNNRPHKIDGRIVEPK 492
Y+ +A + GRI+ K
Sbjct: 213 IYAAEKSAMKAVEFDGVEFHGRILTVK 239
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +1
Query: 502 PREEIKRPEASATVK-KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVV 642
P EE + P+ + K+FV L I++ + E+F FG I +V ++
Sbjct: 150 PEEETRNPQQEFRQEGKIFVGNLPTWIKKPEFEEFFRQFGPIENVILI 197
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/61 (32%), Positives = 33/61 (54%)
Frame = +1
Query: 292 LDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKID 471
LD R D L++ +E++G + D+ + ++ T +GFGF+ Y A EA HK+
Sbjct: 56 LDARPND--LRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNHKVI 113
Query: 472 G 474
G
Sbjct: 114 G 114
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/60 (35%), Positives = 31/60 (51%)
Frame = +1
Query: 238 SGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 417
SG + H +F+G L TD+ L + + D VM D KT RS+GFGF+++
Sbjct: 129 SGQREDTSSHFN-IFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSF 187
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/65 (24%), Positives = 30/65 (46%)
Frame = +1
Query: 226 KPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFG 405
K + +G+ E +++G L + L + G V+++ + +R KGFG
Sbjct: 245 KDTTNGEAPENNAQYTTVYVGNLAPEVSQVDLHRHFHSLG----AGVIEEVRVQRDKGFG 300
Query: 406 FITYS 420
F+ YS
Sbjct: 301 FVRYS 305
>At1g45100.1 68414.m05170 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Nicotiana tabacum] GI:7673355, [Cucumis
sativus] GI:7528270; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 497
Score = 39.1 bits (87), Expect = 0.002
Identities = 24/77 (31%), Positives = 42/77 (54%)
Frame = +1
Query: 214 ILNMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRS 393
IL MK ES EE T+ LF+ L S + F++ GE+V V ++ + + K +
Sbjct: 228 ILLMKGHESPGFAEEAAITKTLFVANLRDSIQISDIINFFKDVGEVVHVRLIVNSQGKHA 287
Query: 394 KGFGFITYSQAHMVDEA 444
G+GF+ ++ A+ ++A
Sbjct: 288 -GWGFVEFASANEAEKA 303
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 38.7 bits (86), Expect = 0.003
Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 1/93 (1%)
Frame = +1
Query: 232 SESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 411
S G D + + L T + L E + +G + V V D KT S+GFGF+
Sbjct: 200 SAVGSDMRRRNDENSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFV 259
Query: 412 TYSQAHMVDEAQNN-RPHKIDGRIVEPKRAVPR 507
+ A N + D I+ + A PR
Sbjct: 260 NFVSREDAQRAINKLNGYGYDNLILRVEWATPR 292
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/85 (23%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Frame = +1
Query: 277 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNR 456
L + L ++ LKE + +GE++ V + D +G G++ + ++AQ
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 457 P-HKIDGRIVEPKRAV-PREEIKRP 525
+IDG++V+ + PR+++ P
Sbjct: 160 DGAQIDGKVVKATFTLPPRQKVSSP 184
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/85 (23%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Frame = +1
Query: 277 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNR 456
L + L ++ LKE + +GE++ V + D +G G++ + ++AQ
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 457 P-HKIDGRIVEPKRAV-PREEIKRP 525
+IDG++V+ + PR+++ P
Sbjct: 160 DGAQIDGKVVKATFTLPPRQKVSSP 184
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 38.3 bits (85), Expect = 0.004
Identities = 14/63 (22%), Positives = 32/63 (50%)
Frame = +1
Query: 256 EPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMV 435
E +R +F+ + + T SL + ++GE++ ++ DP T + G +I +++
Sbjct: 511 EDASSRTIFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKEAA 570
Query: 436 DEA 444
+ A
Sbjct: 571 ENA 573
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +1
Query: 520 RPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVVT 645
RP A+ + +FVA + ++ L +F+ FG ++ +VT
Sbjct: 508 RPLEDASSRTIFVANVHFGATKDSLSRHFNKFGEVLKAFIVT 549
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 37.9 bits (84), Expect = 0.006
Identities = 16/78 (20%), Positives = 40/78 (51%)
Frame = +1
Query: 253 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHM 432
+E +R +++G +DY T +++ ++ G + V ++ D K + KGF ++ + +
Sbjct: 97 KEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTD-KFGQPKGFAYVEFVEVEA 155
Query: 433 VDEAQNNRPHKIDGRIVE 486
V + ++ GR ++
Sbjct: 156 VQNSLILNESELHGRQIK 173
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 37.9 bits (84), Expect = 0.006
Identities = 28/123 (22%), Positives = 58/123 (47%), Gaps = 1/123 (0%)
Frame = +1
Query: 268 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ 447
+R LF+ +D D L ++Q+G++ + +++GF ++Y +A
Sbjct: 210 SRILFVRNVDSSIEDCELGVLFKQFGDVRAL-----HTAGKNRGFIMVSYYDIRAAQKAA 264
Query: 448 NN-RPHKIDGRIVEPKRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNI 624
+ GR ++ + ++P+E P+ +++ L+V L I E+L FS++G I
Sbjct: 265 RALHGRLLRGRKLDIRYSIPKE---NPKENSSEGALWVNNLDSSISNEELHGIFSSYGEI 321
Query: 625 VSV 633
V
Sbjct: 322 REV 324
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 37.5 bits (83), Expect = 0.008
Identities = 37/152 (24%), Positives = 69/152 (45%), Gaps = 28/152 (18%)
Frame = +1
Query: 271 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA-- 444
+ LF+ L Y T ++ +F+++ GE+V V ++ + K K G GF+ ++ + +EA
Sbjct: 127 KTLFVANLPYETKIPNIIDFFKKVGEVVRVQLIVNLKGK-LVGCGFVEFASVNEAEEALQ 185
Query: 445 -------QNNR-------------------PHKIDGRIVEPKRAVPREEIKRPEASATVK 546
NN+ HK+ + + P EE +RP S +
Sbjct: 186 KKNGECLDNNKIFLDVANKKATYLPPKYCIDHKVWDKDYRRLESHPIEEDERPPNSVE-E 244
Query: 547 KLFVAGLKQDIEEEDLREYFSTFGNIVSVSVV 642
LFVA L + D+ ++F+ G +VS+ ++
Sbjct: 245 VLFVANLSPQTKISDIFDFFNCVGEVVSIRLM 276
Score = 35.5 bits (78), Expect = 0.030
Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 26/159 (16%)
Frame = +1
Query: 244 DDYEEPEHTRK-LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYS 420
+D P + LF+ L +T S + +F+ GE+V + +M + + K G+GF+ ++
Sbjct: 234 EDERPPNSVEEVLFVANLSPQTKISDIFDFFNCVGEVVSIRLMVNHEGKH-VGYGFVEFA 292
Query: 421 QAHMVDEAQNNR------PHK--IDGRIVEP------------KRAVPREEIKRP----E 528
A +A N+ HK ID P + ++P +E + P E
Sbjct: 293 SADETKKALENKNGEYLHDHKIFIDVAKTAPYPPGPNYEDYLRRESLPIDEDETPPEFVE 352
Query: 529 ASATVKK-LFVAGLKQDIEEEDLREYFSTFGNIVSVSVV 642
A KK LFVA L + E + +F G +V V ++
Sbjct: 353 AVGVRKKTLFVAHLSRKTEITHIINFFKDVGEVVHVRLI 391
>At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing
protein low similarity to poly(A) binding protein II
from [Xenopus laevis] GI:11527140, [Mus musculus]
GI:2351846, [Bos taurus] GI:1051125; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) domain
Length = 537
Score = 37.5 bits (83), Expect = 0.008
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Frame = +1
Query: 226 KPS-ESGDDY--EEPEHTRKLFIGGLDYRTTDSSLKEFYE-QWGEIVDVVVMKDPKTKRS 393
KPS +SG+ E+ +R + + + Y ++ F+ + G + +V+V+ DP T+
Sbjct: 426 KPSPQSGESQYQEDVSESRVIHVTNVYYAAKKEAISMFFSSKCGAVQNVIVVTDPVTRHP 485
Query: 394 KGFGFITYSQAHMVDEA 444
KG F+T++ V +A
Sbjct: 486 KGTAFVTFATKESVGKA 502
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 37.1 bits (82), Expect = 0.010
Identities = 16/56 (28%), Positives = 30/56 (53%)
Frame = +1
Query: 277 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 444
++IG + + TT+ L E + + GEI +++ D TK GF F+ + ++A
Sbjct: 36 VYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDA 91
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 37.1 bits (82), Expect = 0.010
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +1
Query: 259 PEHTRKLFIGGLDYRTTDSSLKEFYE-QWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMV 435
P T LF+ L + LKEF++ G +V V+ +RS G+GF+++
Sbjct: 185 PVPTFNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQA 244
Query: 436 DEA 444
+ A
Sbjct: 245 EAA 247
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 37.1 bits (82), Expect = 0.010
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = +1
Query: 319 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHK-IDGRIVEPKR 495
L+E +E++G + DV + +D + + +GF F+ + A+ EAQ + + GR E
Sbjct: 63 LREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGR--EITV 120
Query: 496 AVPREEIKRPE 528
V E KRPE
Sbjct: 121 VVASESRKRPE 131
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 37.1 bits (82), Expect = 0.010
Identities = 16/55 (29%), Positives = 31/55 (56%)
Frame = +1
Query: 253 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY 417
E PE+ +LF G L D L + + ++ V++D +T ++KG+GF+++
Sbjct: 131 EWPENDYRLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSF 185
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 36.3 bits (80), Expect = 0.017
Identities = 23/78 (29%), Positives = 40/78 (51%)
Frame = +1
Query: 259 PEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD 438
P L+I LD + ++ L + +G+++ V+ KD + + S+GF FI + A D
Sbjct: 13 PRKFTSLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFRGE-SRGFAFIEFESA---D 68
Query: 439 EAQNNRPHKIDGRIVEPK 492
A H +DGR++ K
Sbjct: 69 SAGRAMLH-MDGRLIGQK 85
>At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 36.3 bits (80), Expect = 0.017
Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 4/128 (3%)
Frame = +1
Query: 262 EH-TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY---SQAH 429
EH +R LF+ ++ DS L +EQ+G+I + T + +GF I+Y A
Sbjct: 164 EHPSRTLFVRNINSNVEDSELTALFEQYGDIRTLYT-----TCKHRGFVMISYYDIRSAR 218
Query: 430 MVDEAQNNRPHKIDGRIVEPKRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFS 609
M + N+P + R ++ ++P++ E L V L I +DL F
Sbjct: 219 MAMRSLQNKP--LRRRKLDIHFSIPKD--NPSEKDMNQGTLVVFNLDPSISNDDLHGIFG 274
Query: 610 TFGNIVSV 633
G I +
Sbjct: 275 AHGEIKEI 282
>At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 36.3 bits (80), Expect = 0.017
Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 4/128 (3%)
Frame = +1
Query: 262 EH-TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY---SQAH 429
EH +R LF+ ++ DS L +EQ+G+I + T + +GF I+Y A
Sbjct: 164 EHPSRTLFVRNINSNVEDSELTALFEQYGDIRTLYT-----TCKHRGFVMISYYDIRSAR 218
Query: 430 MVDEAQNNRPHKIDGRIVEPKRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFS 609
M + N+P + R ++ ++P++ E L V L I +DL F
Sbjct: 219 MAMRSLQNKP--LRRRKLDIHFSIPKD--NPSEKDMNQGTLVVFNLDPSISNDDLHGIFG 274
Query: 610 TFGNIVSV 633
G I +
Sbjct: 275 AHGEIKEI 282
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 35.9 bits (79), Expect = 0.023
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = +1
Query: 277 LFIGGLDYRTTDSSLKEFYEQWGEIV----DVVVMKDPKTKRSKGFGFITYSQAHMVDEA 444
+F+G L TD++L + + + D VM D KT RS+GFGF+++ A
Sbjct: 150 IFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTA 209
Query: 445 QN 450
N
Sbjct: 210 IN 211
Score = 27.9 bits (59), Expect = 6.1
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = +1
Query: 238 SGDDYEE--PEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFI 411
S +D E P+ T +++G L T L + G V+++ + +R KGFGF+
Sbjct: 261 SNEDAPENNPQFTT-VYVGNLSPEVTQLDLHRLFYTLG----AGVIEEVRVQRDKGFGFV 315
Query: 412 TYS 420
Y+
Sbjct: 316 RYN 318
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 35.9 bits (79), Expect = 0.023
Identities = 20/55 (36%), Positives = 28/55 (50%)
Frame = +1
Query: 478 IVEPKRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVV 642
++E +P E+K P+ LFV L E+EDL FS FG +VS V+
Sbjct: 226 VLESIGDIPEAEVKPPD-----NVLFVCKLNPVTEDEDLHTIFSRFGTVVSADVI 275
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 35.5 bits (78), Expect = 0.030
Identities = 19/67 (28%), Positives = 34/67 (50%)
Frame = +1
Query: 226 KPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFG 405
K ++ DD+E R LFI L + T +K+ + +GE+ + ++ TKR +G
Sbjct: 551 KETQDNDDFE-----RTLFIRNLPFDVTKEEVKQRFTVFGEVESLSLVLHKVTKRPEGTA 605
Query: 406 FITYSQA 426
F+ + A
Sbjct: 606 FVKFKTA 612
Score = 30.7 bits (66), Expect = 0.87
Identities = 11/33 (33%), Positives = 23/33 (69%)
Frame = +1
Query: 544 KKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVV 642
+ LF+ L D+ +E++++ F+ FG + S+S+V
Sbjct: 561 RTLFIRNLPFDVTKEEVKQRFTVFGEVESLSLV 593
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 35.5 bits (78), Expect = 0.030
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Frame = +1
Query: 277 LFIGGLDYRTTDSSLKE-FYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 453
+F+G L +D+ L E F E++ + V+ D T RSKG+GF+ + + +A
Sbjct: 199 IFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTE 258
Query: 454 -RPHKIDGRIVEPKRAVPRE 510
K R + A PR+
Sbjct: 259 MNGVKCSSRAMRIGPATPRK 278
Score = 30.3 bits (65), Expect = 1.1
Identities = 27/118 (22%), Positives = 49/118 (41%), Gaps = 5/118 (4%)
Frame = +1
Query: 271 RKLFIGGLDYRTTDSSLKEFYEQWGE--IVDVVVMKDPKTKRSKGFGFITYSQAHMVDEA 444
+ +++G L + ++ L + E IV V V+++ S+G+GF+ + + D+
Sbjct: 101 KTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKV 160
Query: 445 QNNRPHKIDGRIVEPKR---AVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFS 609
+P R A KR E + +FV L D+ + L E FS
Sbjct: 161 LREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFS 218
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 35.1 bits (77), Expect = 0.040
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ 423
KL+I LDY + +KE + + GE+ V D ++ RSKG + YS+
Sbjct: 87 KLYISNLDYGVMNEDIKELFAEVGELKRYTVHFD-RSGRSKGTAEVVYSR 135
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 35.1 bits (77), Expect = 0.040
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ 423
KL+I LDY + +KE + + GE+ V D ++ RSKG + YS+
Sbjct: 23 KLYISNLDYGVMNEDIKELFAEVGELKRYTVHFD-RSGRSKGTAEVVYSR 71
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 35.1 bits (77), Expect = 0.040
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ 423
KL+I LDY + +KE + + GE+ V D ++ RSKG + YS+
Sbjct: 89 KLYISNLDYGVMNEDIKELFAEVGELKRYTVHFD-RSGRSKGTAEVVYSR 137
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 35.1 bits (77), Expect = 0.040
Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 1/93 (1%)
Frame = +1
Query: 241 GDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYS 420
G D + + L T L E + +G + V D KT S+GFGF+++
Sbjct: 164 GSDMRSRHDENSVRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFV 223
Query: 421 QAHMVDEAQNN-RPHKIDGRIVEPKRAVPREEI 516
A N + D I+ + + P+ ++
Sbjct: 224 SREDAQRAINKLNGYGYDNLILRVEWSTPKTQL 256
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 34.7 bits (76), Expect = 0.053
Identities = 19/69 (27%), Positives = 35/69 (50%)
Frame = +1
Query: 277 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNR 456
L + L + L+ +EQ+G + D+ + +D T +GFGFI + EA+
Sbjct: 39 LLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAK--- 95
Query: 457 PHKIDGRIV 483
H++DG ++
Sbjct: 96 -HQMDGYLL 103
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 34.3 bits (75), Expect = 0.070
Identities = 22/67 (32%), Positives = 35/67 (52%)
Frame = +1
Query: 217 LNMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSK 396
L+MKP + D + + L++G L TT+S L E + ++G+I + V S+
Sbjct: 3 LSMKPFRADDSGFQ---SNNLWVGSLTPETTESDLTELFGRYGDIDRITVYS------SR 53
Query: 397 GFGFITY 417
GF FI Y
Sbjct: 54 GFAFIYY 60
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 544 KKLFVAGLKQDIEEEDLREYFSTFGNI 624
K L+V G+ ++ ++DL E FS FG I
Sbjct: 250 KSLWVGGIGPNVSKDDLEEEFSKFGKI 276
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 33.9 bits (74), Expect = 0.093
Identities = 16/71 (22%), Positives = 35/71 (49%)
Frame = +1
Query: 283 IGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPH 462
+ GL ++T+ L + +WG + V V+++ + S+GF FI + + H
Sbjct: 302 VKGLSMKSTEEDLYQILAEWGPLHHVRVIREQNSGISRGFAFIDFPTVDAARTMMDRIEH 361
Query: 463 KIDGRIVEPKR 495
DG +++ ++
Sbjct: 362 --DGIVLDGRK 370
Score = 33.1 bits (72), Expect = 0.16
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Frame = +1
Query: 217 LNMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSK 396
+ + S +G E T L + GLD + L+ + + I D+ +++D T S+
Sbjct: 440 VGLSNSAAGKRISETGPTHVLVVRGLDEDADEEMLRYEFSKHAPIKDLRLVRDKFTHVSR 499
Query: 397 GFGFITY---SQAHMVDEAQNNRPHKIDGRIV 483
GF F+ + A EA N + +G+I+
Sbjct: 500 GFAFVHFYSVEDATKALEATNRTALERNGKIL 531
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 33.5 bits (73), Expect = 0.12
Identities = 17/69 (24%), Positives = 35/69 (50%)
Frame = +1
Query: 277 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNR 456
L + L + L++ +EQ+G + D+ + +D T +GFGF+ + +A+
Sbjct: 38 LLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAK--- 94
Query: 457 PHKIDGRIV 483
H +DG ++
Sbjct: 95 -HHMDGYLL 102
>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
EMBL:D86122
Length = 915
Score = 33.1 bits (72), Expect = 0.16
Identities = 24/123 (19%), Positives = 52/123 (42%), Gaps = 1/123 (0%)
Frame = +1
Query: 268 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ 447
+R L +G + D LK +EQ+G+I + +++GF ++Y A
Sbjct: 216 SRTLLVGNISSNVEDYELKVLFEQFGDIQAL-----HTACKNRGFIMVSYCDIRAAQNAA 270
Query: 448 NNRPHK-IDGRIVEPKRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNI 624
+K + G ++ + ++ +E + + S L V L I ++L ++G +
Sbjct: 271 RALQNKLLRGTKLDIRYSISKENPSQKDTSKGA--LLVNNLDSSISNQELNRLVKSYGEV 328
Query: 625 VSV 633
+
Sbjct: 329 KEI 331
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 33.1 bits (72), Expect = 0.16
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = +1
Query: 277 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 450
LFI + D L ++ +G+++ V D T SK FGFI+Y A N
Sbjct: 341 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAIN 398
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 33.1 bits (72), Expect = 0.16
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = +1
Query: 277 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 450
LFI + D L ++ +G+++ V D T SK FGFI+Y A N
Sbjct: 332 LFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYDSQAAAQNAIN 389
>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
putative BcDNA.LD24793, Drosophila melanogaster,
EMBL:AF172637
Length = 292
Score = 32.3 bits (70), Expect = 0.28
Identities = 15/50 (30%), Positives = 29/50 (58%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ 423
KL+I LDY ++ +KE + + G++ + D ++ RSKG + +S+
Sbjct: 109 KLYISNLDYGVSNEDIKELFSEVGDLKRYGIHYD-RSGRSKGTAEVVFSR 157
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 32.3 bits (70), Expect = 0.28
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +1
Query: 505 REEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSV 633
R + A ++ KL+VA + + E D+R+ F +GN+ +
Sbjct: 97 RSQSATDNADGSIAKLYVAPISKTATEYDIRQVFEKYGNVTEI 139
>At2g42890.2 68415.m05312 RNA recognition motif (RRM)-containing
protein
Length = 830
Score = 32.3 bits (70), Expect = 0.28
Identities = 30/130 (23%), Positives = 55/130 (42%), Gaps = 4/130 (3%)
Frame = +1
Query: 247 DYEEPEH-TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-- 417
++ EH +R LF+ ++ DS L +E +GEI + +S+GF I+Y
Sbjct: 176 EHPNGEHPSRTLFVRNINSSVEDSELSALFEPFGEIRSLYT-----ACKSRGFVMISYYD 230
Query: 418 -SQAHMVDEAQNNRPHKIDGRIVEPKRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDL 594
AH A N + R ++ ++P+E E L + + + ++L
Sbjct: 231 IRAAHAAMRALQNT--LLRKRTLDIHFSIPKE--NPSEKDMNQGTLVIFNVDTTVSNDEL 286
Query: 595 REYFSTFGNI 624
+ F +G I
Sbjct: 287 LQLFGAYGEI 296
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = +1
Query: 505 REEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSV 633
R ++ P + LFV + +E+ +L F FG I S+
Sbjct: 172 RVSVEHPNGEHPSRTLFVRNINSSVEDSELSALFEPFGEIRSL 214
>At2g42890.1 68415.m05311 RNA recognition motif (RRM)-containing
protein
Length = 843
Score = 32.3 bits (70), Expect = 0.28
Identities = 30/130 (23%), Positives = 55/130 (42%), Gaps = 4/130 (3%)
Frame = +1
Query: 247 DYEEPEH-TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITY-- 417
++ EH +R LF+ ++ DS L +E +GEI + +S+GF I+Y
Sbjct: 189 EHPNGEHPSRTLFVRNINSSVEDSELSALFEPFGEIRSLYT-----ACKSRGFVMISYYD 243
Query: 418 -SQAHMVDEAQNNRPHKIDGRIVEPKRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDL 594
AH A N + R ++ ++P+E E L + + + ++L
Sbjct: 244 IRAAHAAMRALQNT--LLRKRTLDIHFSIPKE--NPSEKDMNQGTLVIFNVDTTVSNDEL 299
Query: 595 REYFSTFGNI 624
+ F +G I
Sbjct: 300 LQLFGAYGEI 309
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = +1
Query: 505 REEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSV 633
R ++ P + LFV + +E+ +L F FG I S+
Sbjct: 185 RVSVEHPNGEHPSRTLFVRNINSSVEDSELSALFEPFGEIRSL 227
>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}; contains Pfam profile:
PF00076 RNA recognition motif (aka RRM, RBD, or RNP
domain)
Length = 483
Score = 32.3 bits (70), Expect = 0.28
Identities = 23/113 (20%), Positives = 51/113 (45%), Gaps = 1/113 (0%)
Frame = +1
Query: 226 KPSESGD-DYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGF 402
K E G + E + R L++GGL+ R + +++ + GEI + ++ + K
Sbjct: 212 KAGEMGTLESPEDQSIRTLYVGGLNSRVLEQDIRDQFYAHGEIESIRILAE------KAC 265
Query: 403 GFITYSQAHMVDEAQNNRPHKIDGRIVEPKRAVPREEIKRPEASATVKKLFVA 561
F+TY+ ++A +++ K R ++ +P+ + ++ VA
Sbjct: 266 AFVTYTTREGAEKAAEELSNRLVVNGQRLKLTWGRPQVPKPDQDGSNQQGSVA 318
>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
protein
Length = 573
Score = 32.3 bits (70), Expect = 0.28
Identities = 15/63 (23%), Positives = 33/63 (52%)
Frame = +1
Query: 214 ILNMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRS 393
++N P++S + LF+G L + TTD+ ++ Q+G + ++ + + +S
Sbjct: 186 MMNKSPTQS---FVVDNGNTMLFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKS 242
Query: 394 KGF 402
KG+
Sbjct: 243 KGY 245
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 31.9 bits (69), Expect = 0.37
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +1
Query: 535 ATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVV 642
+++ LFV G + E L++ FS FG + +V ++
Sbjct: 55 SSISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKII 90
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 31.9 bits (69), Expect = 0.37
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +1
Query: 535 ATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVV 642
+++ LFV G + E L++ FS FG + +V ++
Sbjct: 74 SSISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKII 109
>At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative similar to
spliceosomal protein [Solanum tuberosum] GI:169589
Length = 232
Score = 31.5 bits (68), Expect = 0.50
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Frame = +1
Query: 271 RKLFIGGLDYRTTDSSLKE----FYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQ----A 426
+ ++I L+ R LK + Q+G I+DVV +K PK +G ++T+S+
Sbjct: 10 QSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKL---RGQAWVTFSEVTAAG 66
Query: 427 HMVDEAQN 450
H V + QN
Sbjct: 67 HAVRQMQN 74
>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}, RNA Binding Protein 47
[Nicotiana plumbaginifolia] GI:9663769; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 481
Score = 31.5 bits (68), Expect = 0.50
Identities = 19/78 (24%), Positives = 38/78 (48%)
Frame = +1
Query: 235 ESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFIT 414
ES DD E + L++GGL+ R + +++ + GEI + ++ D K F+T
Sbjct: 220 ESPDD----ESIKTLYVGGLNSRILEQDIRDQFYAHGEIESIRILAD------KACAFVT 269
Query: 415 YSQAHMVDEAQNNRPHKI 468
Y+ ++A +++
Sbjct: 270 YTSREGAEKAAQELSNRL 287
>At2g39090.1 68415.m04803 tetratricopeptide repeat (TPR)-containing
protein low similarity to prediabetic NOD sera-reactive
autoantigen [Mus musculus] GI:6670773,
anaphase-promoting complex subunit 7 [Homo sapiens]
GI:6180015; contains Pfam profile PF00515: TPR Domain
Length = 558
Score = 31.1 bits (67), Expect = 0.65
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -3
Query: 337 AHRILLMKNLWFYSRVHR*KVYVCVQVLHSHRRFPKAS 224
A ++L+ + F+ R HR ++ Q LH + R PK S
Sbjct: 43 AENLILLGDALFHQREHRRAIHTYKQALHHYTRIPKQS 80
>At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing
protein
Length = 90
Score = 31.1 bits (67), Expect = 0.65
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 553 FVAGLKQDIEEEDLREYFSTFGNIVSVSV 639
+V L+ D EE DL+ FS FG+++ +V
Sbjct: 11 YVGNLESDTEENDLKNAFSQFGDVIHSNV 39
>At5g46250.2 68418.m05694 RNA recognition motif (RRM)-containing
protein contains similarity to RNA-binding protein;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 420
Score = 30.7 bits (66), Expect = 0.87
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +1
Query: 490 KRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSV 639
KR P EI+ P+ + + V L +D E++RE F G+I SVS+
Sbjct: 179 KRLSPLPEIRDPK----IFTVLVENLPEDHSNENIREIFGKAGSIKSVSI 224
>At5g46250.1 68418.m05693 RNA recognition motif (RRM)-containing
protein contains similarity to RNA-binding protein;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 422
Score = 30.7 bits (66), Expect = 0.87
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +1
Query: 490 KRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSV 639
KR P EI+ P+ + + V L +D E++RE F G+I SVS+
Sbjct: 179 KRLSPLPEIRDPK----IFTVLVENLPEDHSNENIREIFGKAGSIKSVSI 224
>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF01480: PWI domain, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 899
Score = 30.7 bits (66), Expect = 0.87
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = +1
Query: 253 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQA 426
E+P+ T ++IG + D + E G + + +DP TK+ KGFGF + A
Sbjct: 200 EKPQTT--IYIGKIATVENDFMMS-ILEFCGHVKSCLRAEDPTTKKPKGFGFYEFESA 254
>At5g09830.1 68418.m01137 BolA-like family protein contains Pfam
profile: PF01722 BolA-like protein
Length = 93
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +2
Query: 386 RDQKDLDLLHILKPIWLMKLKIIGLTKLTEELSSQNEQFQGKRLKDQ 526
++Q + L LKPI L + I G + E+ +EQF+GKRL ++
Sbjct: 4 KEQVEASLTSKLKPIHLEVIDISGGCGSSFEVEVVSEQFEGKRLLER 50
>At1g53650.1 68414.m06105 RNA-binding protein, putative similar to
RNA-binding protein GB:AAA86641 GI:1174153 from
[Arabidopsis thaliana]
Length = 314
Score = 30.3 bits (65), Expect = 1.1
Identities = 28/139 (20%), Positives = 55/139 (39%), Gaps = 11/139 (7%)
Frame = +1
Query: 229 PSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGF 408
P + E R +++ +D T+ L + G++VD + DP + F F
Sbjct: 114 PGRASKAQREDSIRRTVYVSDIDQSVTEEGLAGLFSSCGQVVDCRICGDPNSVLR--FAF 171
Query: 409 ITYSQAHMVDEAQNNRPHKI---DGRIVEPKRAV--------PREEIKRPEASATVKKLF 555
+ +S A + I R++ K A+ PR E +R S T+ +
Sbjct: 172 VEFSDDQGARSALSLGGTMIGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTI---Y 228
Query: 556 VAGLKQDIEEEDLREYFST 612
+ ++ E+D+ +F +
Sbjct: 229 CTNVDKNATEDDVNTFFQS 247
>At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain), PF02136: Nuclear
transport factor 2 (NTF2) domain
Length = 1294
Score = 29.9 bits (64), Expect = 1.5
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Frame = +1
Query: 259 PEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVD 438
P + + + L T + ++ ++Q+GEI V + + KRS +GF+ + + +
Sbjct: 1072 PANNAAICVKNLPLNATIALVENAFKQFGEIRRGGV--EVRNKRSFSYGFVEFKEENAAQ 1129
Query: 439 EAQNNRPHKIDGR--IVEPKR 495
A P ID R VE KR
Sbjct: 1130 RAIKASPVTIDLRSVYVEKKR 1150
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +1
Query: 277 LFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGF 402
LF+G L + TTD+ L+ ++G + +V + + +SKG+
Sbjct: 236 LFVGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGY 277
>At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-box
RNA helicase [Chlamydomonas reinhardtii] GI:12044832;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1226
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +1
Query: 448 NNRPHKIDGRIVEPKRAVPREEIKRPEASATVKKLFVAGLKQDIEEE 588
+ +P +DGR+V K+A P +K P + + +GL ++I E+
Sbjct: 409 DTKPPFLDGRVVYTKQAEPVMPVKDPTSDMAIISRKGSGLVKEIREK 455
>At4g11130.1 68417.m01805 RNA-dependent RNA polymerase, putative
similar to RNA-directed RNA polymerase [Lycopersicon
esculentum] gi|4038592|emb|CAA71421
Length = 1133
Score = 29.5 bits (63), Expect = 2.0
Identities = 24/126 (19%), Positives = 56/126 (44%), Gaps = 5/126 (3%)
Frame = +1
Query: 274 KLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNN 453
K+++ G + T + +K F E + + V +++ +K + + + V ++ N
Sbjct: 390 KIYLLGPELETANYVVKNFAEHVSDFMRVTFVEEDWSKLPANALSVNSKEGYFVKPSRTN 449
Query: 454 RPHKI-----DGRIVEPKRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFG 618
+++ +G V PKR E + + +++ + ++ ED+RE+ F
Sbjct: 450 IYNRVLSILGEGITVGPKRF---EFLAFSASQLRGNSVWMFASNEKVKAEDIREWMGCFR 506
Query: 619 NIVSVS 636
I S+S
Sbjct: 507 KIRSIS 512
>At3g50670.2 68416.m05543 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 204
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +1
Query: 220 NMKPSESGDDYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEI 351
N P+ +GD Y + LF+ L+Y +++S +K +E +G I
Sbjct: 127 NNDPNATGDPY------KTLFVSRLNYESSESKIKREFESYGPI 164
>At3g10845.1 68416.m01306 RNA recognition motif (RRM)-containing
protein similar to SP|P42731 Polyadenylate-binding
protein 2 (Poly(A) binding protein 2) (PABP 2)
{Arabidopsis thaliana}; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 423
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +1
Query: 499 VPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSVV 642
+PR+E + P A + LFVA L + D+ + G +VSV ++
Sbjct: 112 LPRQEDETPPADFAEEVLFVANLSPQTKILDIFGFCQDVGEVVSVRLI 159
>At5g13655.1 68418.m01588 hypothetical protein
Length = 395
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/51 (23%), Positives = 28/51 (54%)
Frame = +1
Query: 319 LKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKID 471
L ++ ++W +I+ ++ KD T +S G++ + H + +++R H D
Sbjct: 301 LDKYSDRWQDIILMLTRKDFDTTKSFILGYVLQNSIHSIWRERDDRRHGED 351
>At3g14450.1 68416.m01831 RNA-binding protein, putative contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) (2 copies)
Length = 327
Score = 29.1 bits (62), Expect = 2.6
Identities = 24/125 (19%), Positives = 53/125 (42%), Gaps = 11/125 (8%)
Frame = +1
Query: 271 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 450
R +++ +D T+ L + G++VD + DP + F F+ ++ EA +
Sbjct: 141 RTVYVSDIDQSVTEEGLAGLFSNCGQVVDCRICGDPHSVLR--FAFVEFADDQGAHEALS 198
Query: 451 NRPHKI---DGRIVEPKRAV--------PREEIKRPEASATVKKLFVAGLKQDIEEEDLR 597
+ R++ K A+ PR E +R + T+ + + + + + D+R
Sbjct: 199 LGGTMLGFYPVRVLPSKTAILPVNPTFLPRSEDEREMCTRTI---YCTNIDKKVSQADVR 255
Query: 598 EYFST 612
+F +
Sbjct: 256 NFFES 260
>At1g41855.1 68414.m04833 hypothetical protein
Length = 261
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 376 PKTKRSKGFGFITYSQAHMVDEAQNNRPH-KIDGRIVEPKRAVP 504
P+ K KGFG + + + +E++N +PH + GR+ + P
Sbjct: 13 PELKNVKGFGDLELLASKLEEESRNQKPHTRPPGRVHPAPHSTP 56
>At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 363
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +1
Query: 256 EPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKD 375
E E + L++GGL+ R + + + + +GE+ + VM +
Sbjct: 220 EDESIKTLYVGGLNSRIFEQDIHDHFYAYGEMESIRVMAE 259
>At1g32790.1 68414.m04042 RNA-binding protein, putative similar to
RNA-binding protein GB:CAB40027 GI:4539439 from
[Arabidopsis thaliana]
Length = 358
Score = 28.7 bits (61), Expect = 3.5
Identities = 25/126 (19%), Positives = 54/126 (42%), Gaps = 11/126 (8%)
Frame = +1
Query: 271 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 450
R +++ LD + T+ L + G++VD + DP + F FI ++ A N
Sbjct: 173 RTVYVSDLDQQVTEEQLAGLFVSCGQVVDCRICGDPNSVLR--FAFIEFTDEEGAMTALN 230
Query: 451 NRPHKI---DGRIVEPKRAV--------PREEIKRPEASATVKKLFVAGLKQDIEEEDLR 597
+ +++ K A+ PR E +R + T+ + + + + + D++
Sbjct: 231 LSGTMLGFYPVKVLPSKTAIAPVNPTFLPRTEDEREMCARTI---YCTNIDKKVTQSDVK 287
Query: 598 EYFSTF 615
+F +F
Sbjct: 288 IFFESF 293
>At5g66010.1 68418.m08312 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative similar to Heterogeneous
nuclear ribonucleoprotein SP|P55795, SP|P31943,
SP|P52597 {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM) domain
Length = 289
Score = 28.3 bits (60), Expect = 4.6
Identities = 24/93 (25%), Positives = 36/93 (38%)
Frame = +1
Query: 253 EEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHM 432
E+ E+T L + GL Y + EF+ + I V + ++ G F+ +
Sbjct: 194 EKLEYTEVLKMRGLPYSVNKPQIIEFFSGYKVIQGRVQVVCRPDGKATGEAFVEFETGEE 253
Query: 433 VDEAQNNRPHKIDGRIVEPKRAVPREEIKRPEA 531
A I R VE REE +R EA
Sbjct: 254 ARRAMAKDKMSIGSRYVE-LFPTTREEARRAEA 285
>At5g60170.1 68418.m07543 RNA recognition motif (RRM)-containing
protein low similarity to transcriptional repressor
Not4-Np [Homo sapiens] GI:6856207; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif)
Length = 944
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/33 (33%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
Frame = +1
Query: 550 LFVAGLKQDIEEEDL---REYFSTFGNIVSVSV 639
+++ GL ++ +EDL +EYF +G ++ VS+
Sbjct: 70 VYIVGLPLNLADEDLLQHKEYFGQYGKVLKVSM 102
>At5g19030.3 68418.m02263 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 130
Score = 27.9 bits (59), Expect = 6.1
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +1
Query: 535 ATVKKLFVAGLKQDIEEEDLREYFSTFGNIVS 630
+++ LFV G + E L++ FS FG + +
Sbjct: 55 SSISSLFVKGFSDSVSEGRLKKVFSEFGQVTN 86
>At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 817
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/68 (23%), Positives = 35/68 (51%)
Frame = +1
Query: 439 EAQNNRPHKIDGRIVEPKRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFG 618
+A+N + D E + + + ++ R E +A F++ L +EED+R++F G
Sbjct: 622 KAENGKTADSDKEETEDAKPL-KPKVYRDECTA-----FISNLSVKAQEEDIRKFFGDDG 675
Query: 619 NIVSVSVV 642
+ S+ ++
Sbjct: 676 GVDSIRIL 683
>At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 816
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/68 (23%), Positives = 35/68 (51%)
Frame = +1
Query: 439 EAQNNRPHKIDGRIVEPKRAVPREEIKRPEASATVKKLFVAGLKQDIEEEDLREYFSTFG 618
+A+N + D E + + + ++ R E +A F++ L +EED+R++F G
Sbjct: 622 KAENGKTADSDKEETEDAKPL-KPKVYRDECTA-----FISNLSVKAQEEDIRKFFGDDG 675
Query: 619 NIVSVSVV 642
+ S+ ++
Sbjct: 676 GVDSIRIL 683
>At3g58480.1 68416.m06518 calmodulin-binding family protein contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 575
Score = 27.9 bits (59), Expect = 6.1
Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 5/102 (4%)
Frame = +1
Query: 313 SSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQNNRPHKIDGRIVEPK 492
S +KE E+ + VD P TK + T S+ H + P + D I E +
Sbjct: 378 SRIKETEEEHCDFVDAETGFSPNTKPNNHAELQTLSRFHSKLSRLDEIPDEDDNMIEEEQ 437
Query: 493 RAVPREEIKRPEASATVKKLFVAG-----LKQDIEEEDLREY 603
E + T ++ F+A K ++ +ED+ +Y
Sbjct: 438 DDEEEPETPSEQGYETAEETFIAEEEFTYPKSNLFDEDIEDY 479
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/70 (20%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +1
Query: 268 TRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQ 447
+R +++G L + +++ + ++G IVD+ + P R + F+ + + ++A
Sbjct: 6 SRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPP---RPPCYCFVEFEHSRDAEDAI 62
Query: 448 NNRP-HKIDG 474
R + +DG
Sbjct: 63 KGRDGYNLDG 72
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 27.9 bits (59), Expect = 6.1
Identities = 28/133 (21%), Positives = 53/133 (39%), Gaps = 12/133 (9%)
Frame = +1
Query: 271 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 450
R +++G DY T S L+ + ++G + V D K+ G+ F+ + ++A
Sbjct: 2 RHVYVGNFDYDTRHSDLERLFSKFGRVKRV----DMKS----GYAFVYFEDERDAEDAIR 53
Query: 451 NRPHKIDG-----------RIVEPKRAVPREEIKRPEASATVKKLFVAGLKQ-DIEEEDL 594
+ G + + +R PR+ K K LFV E D+
Sbjct: 54 RTDNTTFGYGRRKLSVEWAKDFQGERGKPRDG-KAVSNQRPTKTLFVINFDPIRTRERDM 112
Query: 595 REYFSTFGNIVSV 633
+F +G +++V
Sbjct: 113 ERHFEPYGKVLNV 125
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = +1
Query: 271 RKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQAHMVDEAQN 450
R +++G L +++ + ++G IVD+ + P R G+ F+ + D+A
Sbjct: 7 RTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPP---RPPGYAFVEFEDPRDADDAIY 63
Query: 451 NRP-HKIDG 474
R + DG
Sbjct: 64 GRDGYDFDG 72
>At3g53290.1 68416.m05876 cytochrome P450, putative Similar to
Cytochrome P450 71B31 (SP:Q9SCN2)[Arabidopsis thaliana];
conatins Pfam profile: PF00067 cytochrome P450
Length = 407
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/63 (20%), Positives = 28/63 (44%)
Frame = +1
Query: 247 DYEEPEHTRKLFIGGLDYRTTDSSLKEFYEQWGEIVDVVVMKDPKTKRSKGFGFITYSQA 426
D E + + G Y D ++ E+WGE+ ++ ++ K K F +I ++
Sbjct: 19 DLETCTRPKMVTTGLFSYNFKDIGFTQYGEEWGEMKKLIGLELFSPKTQKSFRYIREEES 78
Query: 427 HMV 435
++
Sbjct: 79 DLL 81
>At1g78810.2 68414.m09186 expressed protein
Length = 480
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/30 (40%), Positives = 22/30 (73%)
Frame = -1
Query: 624 NISKCTKILSQVFFFNVLLQSSYKQLFNGG 535
N+S+ +++S+VF NV L+S Y++ + GG
Sbjct: 343 NLSEELELISKVFSENVELKSYYEKNYEGG 372
>At1g78810.1 68414.m09185 expressed protein
Length = 481
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/30 (40%), Positives = 22/30 (73%)
Frame = -1
Query: 624 NISKCTKILSQVFFFNVLLQSSYKQLFNGG 535
N+S+ +++S+VF NV L+S Y++ + GG
Sbjct: 343 NLSEELELISKVFSENVELKSYYEKNYEGG 372
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/39 (28%), Positives = 23/39 (58%)
Frame = +1
Query: 523 PEASATVKKLFVAGLKQDIEEEDLREYFSTFGNIVSVSV 639
P+ S + V+G+ ++ +EED+ F FG I ++++
Sbjct: 88 PQRSVEGWIILVSGVHEETQEEDITNAFGDFGEIKNLNL 126
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,981,331
Number of Sequences: 28952
Number of extensions: 249713
Number of successful extensions: 1092
Number of sequences better than 10.0: 215
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1042
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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