Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0163
         (334 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac...    25   2.3  
SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   3.0  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    24   5.3  
SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    24   7.0  
SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomy...    24   7.0  
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro...    23   9.2  
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|...    23   9.2  

>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
           Rad4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 648

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +2

Query: 158 LKPYARTTLVAKCNIKCKCRLFCSYSFYIYE 250
           ++P     L  + NI+ + +LF + +FY+YE
Sbjct: 282 VQPLEENELDTELNIENEAKLFKNLTFYLYE 312


>SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 84  NVFSFYEIFILAYFYY 37
           N+   YE+FI+ Y+YY
Sbjct: 57  NILLKYELFIIYYYYY 72


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1647

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 252 SS*I*NEYEQNNLHLHLILHFATSVVRA 169
           SS + +  + NNLH++L  H A S++ A
Sbjct: 804 SSKVRDNLQNNNLHVYLTRHPAISLLEA 831


>SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 127

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -2

Query: 123 ID*IAE*ANQIQNNVFSFYEIFILAYFYYCSFFQAS 16
           +D + E  N   +N+   YE+++L   Y   FF +S
Sbjct: 7   LDLLDELLNDSSSNMIWLYEVYMLYKTYTSYFFMSS 42


>SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 43  KISQYKYFIETEYIVLYLIGLFCYL 117
           KIS     I   Y+++YLI  FCY+
Sbjct: 270 KISIKWMSINQLYLLIYLISGFCYI 294


>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
           6-
           hydroxymethyldihydropteridinediphosphokinase/dihydroneop
           terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 272 STFTYVAVHKYKMNTNKIIYI 210
           S F   ++HKY+   NKI Y+
Sbjct: 233 SYFLQESLHKYESTKNKIAYL 253


>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 834

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +1

Query: 43  KISQYKYFIETEYIVLYLIGLFCYLI-NGLPNLSE*CSAVEALR 171
           KIS  +YF+E   + L    L C L+ NG     E C  V+  R
Sbjct: 286 KISVAEYFLENHNVRLQYPNLPCILVKNGAMLPIEFCFVVKGQR 329


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,224,989
Number of Sequences: 5004
Number of extensions: 22503
Number of successful extensions: 49
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)