Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0163
         (334 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49127-11|CAA88952.2|  452|Caenorhabditis elegans Hypothetical p...    27   4.3  
AL033535-4|CAA22134.2|  452|Caenorhabditis elegans Hypothetical ...    27   4.3  
U50309-5|AAG24135.1|  339|Caenorhabditis elegans Seven tm recept...    26   5.7  

>Z49127-11|CAA88952.2|  452|Caenorhabditis elegans Hypothetical
           protein F13D12.9 protein.
          Length = 452

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 12  GTRLERKNNSKNKPI*IFHRN*IHCFVFDWLILL 113
           G   E  NN+++KP+ +   N IH   F WL+LL
Sbjct: 57  GNAAEPNNNAQSKPVLLTIHNPIH---FCWLMLL 87


>AL033535-4|CAA22134.2|  452|Caenorhabditis elegans Hypothetical
           protein F13D12.9 protein.
          Length = 452

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 12  GTRLERKNNSKNKPI*IFHRN*IHCFVFDWLILL 113
           G   E  NN+++KP+ +   N IH   F WL+LL
Sbjct: 57  GNAAEPNNNAQSKPVLLTIHNPIH---FCWLMLL 87


>U50309-5|AAG24135.1|  339|Caenorhabditis elegans Seven tm receptor
           protein 90 protein.
          Length = 339

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 242 YKMNTNKIIYICT*YYILQPVSCERRASTAEHYSER 135
           + +N  K+I IC    +   +S  R+  T  HYS+R
Sbjct: 201 FAVNVVKLISICMIIVLFCGISTFRKLRTLRHYSKR 236


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,754,275
Number of Sequences: 27780
Number of extensions: 124445
Number of successful extensions: 315
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 408121444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)