Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0163
         (334 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   0.56 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   0.56 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   3.9  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    20   6.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    20   6.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    20   6.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    20   6.8  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    20   9.1  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          20   9.1  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.8 bits (49), Expect = 0.56
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +1

Query: 64  FIETEYIVLYLIGLFCYLINGL 129
           FI     V YLIGLFC    G+
Sbjct: 418 FIAIVCFVSYLIGLFCITEGGM 439


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.8 bits (49), Expect = 0.56
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +1

Query: 64  FIETEYIVLYLIGLFCYLINGL 129
           FI     V YLIGLFC    G+
Sbjct: 471 FIAIVCFVSYLIGLFCITEGGM 492


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 3.9
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +2

Query: 179 TLVAKCNIKCKCRLFC 226
           T + +CN +C C + C
Sbjct: 469 TPIYECNKRCNCDIDC 484


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = +3

Query: 165 PTLARHWLQNVISSANVDYFVRIHFIFMNC 254
           P +  H+   +  +  V+Y +R H I ++C
Sbjct: 158 PLIPVHFALRIYRNGTVNYLMRRHLI-LSC 186


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = +3

Query: 165 PTLARHWLQNVISSANVDYFVRIHFIFMNC 254
           P +  H+   +  +  V+Y +R H I ++C
Sbjct: 158 PLIPVHFALRIYRNGTVNYLMRRHLI-LSC 186


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = +3

Query: 165 PTLARHWLQNVISSANVDYFVRIHFIFMNC 254
           P +  H+   +  +  V+Y +R H I ++C
Sbjct: 209 PLIPVHFALRIYRNGTVNYLMRRHLI-LSC 237


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = +3

Query: 165 PTLARHWLQNVISSANVDYFVRIHFIFMNC 254
           P +  H+   +  +  V+Y +R H I ++C
Sbjct: 158 PLIPVHFALRIYRNGTVNYLMRRHLI-LSC 186


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -2

Query: 156 CRTLFGEIRKTID*IAE*ANQIQNNVF 76
           C TLFG +   +  + E A Q   N F
Sbjct: 198 CLTLFGNVLVILAVVRERALQTVTNYF 224



 Score = 19.8 bits (39), Expect = 9.1
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 93  IQNNVFSFYEIFILAYFYYCSFFQA 19
           I +++ SFY   I+  F Y + F+A
Sbjct: 345 IYSSLSSFYIPCIIMVFLYYNIFKA 369


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 7/10 (70%), Positives = 10/10 (100%)
 Frame = +1

Query: 151 SAVEALRSHD 180
           +A+EALR+HD
Sbjct: 418 AALEALRNHD 427


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,675
Number of Sequences: 438
Number of extensions: 1565
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7466580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)