Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0163
         (334 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g50270.1 68418.m06225 F-box family protein contains F-box dom...    28   1.4  
At4g15560.1 68417.m02377 1-deoxy-D-xylulose 5-phosphate synthase...    25   9.5  
At2g23310.2 68415.m02783 RER1C protein identical to SP|Q9ZWI7 RE...    25   9.5  
At2g23310.1 68415.m02782 RER1C protein identical to SP|Q9ZWI7 RE...    25   9.5  

>At5g50270.1 68418.m06225 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 381

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 76  EYIVLYLIGLFCYLINGLPNLSE*CSAVEALRSH 177
           EY+ +   G FC + NG+PNL+E  + V  L  H
Sbjct: 230 EYLDIDQTGGFCVIENGMPNLAE--AYVSVLHHH 261


>At4g15560.1 68417.m02377 1-deoxy-D-xylulose 5-phosphate synthase,
           putative / 1-deoxyxylulose-5-phosphate synthase,
           putative / DXP-synthase, putative (DEF) (CLA1) identical
           to SP|Q38854 Probable 1-deoxy-D-xylulose 5-phosphate
           synthase, chloroplast precursor (EC 4.1.3.37)
           (1-deoxyxylulose-5-phosphate synthase) (DXP synthase)
           (DXPS). [Mouse-ear cress] {Arabidopsis thaliana}, DEF
           (deficient in photosynthesis) protein [Arabidopsis
           thaliana] GI:1399261
          Length = 717

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -3

Query: 176 CERRASTAEHYSERFGRPLIK*QNKPIKYKTMYSVSMKYL 57
           C   A   E+YS R   PL+   N PI  K +    +K L
Sbjct: 58  CASLAEKGEYYSNRPPTPLLDTINYPIHMKNLSVKELKQL 97


>At2g23310.2 68415.m02783 RER1C protein identical to SP|Q9ZWI7 RER1C
           protein (AtRER1C) {Arabidopsis thaliana}
          Length = 211

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 61  YFIETEYIVLYLIGLFCYLIN 123
           YF+E  YI+ Y IG+  YL+N
Sbjct: 78  YFVEGFYIITYAIGI--YLLN 96


>At2g23310.1 68415.m02782 RER1C protein identical to SP|Q9ZWI7 RER1C
           protein (AtRER1C) {Arabidopsis thaliana}
          Length = 212

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 61  YFIETEYIVLYLIGLFCYLIN 123
           YF+E  YI+ Y IG+  YL+N
Sbjct: 78  YFVEGFYIITYAIGI--YLLN 96


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,044,511
Number of Sequences: 28952
Number of extensions: 103455
Number of successful extensions: 213
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 390583752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)