Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0162
         (615 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    23   1.5  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    23   2.7  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   2.7  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   3.6  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    22   3.6  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   6.2  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   6.2  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   6.2  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   6.2  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   8.2  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 12/53 (22%), Positives = 26/53 (49%)
 Frame = +1

Query: 310 LRRKDRDVSFQTSVPNRTEGGSPEHAVPLPKQQLPAKSELRIGGQSIFEQRTE 468
           ++RK++    +   PN T  GSP+  + +  +   ++  L  G + I  ++ E
Sbjct: 266 VKRKEKKAQKEKDKPNSTTNGSPD-VIKVEPELSDSEKTLCNGSKGISPEQEE 317


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +2

Query: 23  PVPASQPEPSSTNSIRP 73
           PVP  +P+P+ T    P
Sbjct: 395 PVPTPEPQPTQTTESEP 411


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 467  RTVNRTEKNKVKFSDTVTIAVMSDPPGSPDSA 562
            R V   E    + S+TVTI    + PG P ++
Sbjct: 970  RIVAENEIGSSEPSETVTIITAEEVPGGPPTS 1001


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 519 VTVSENLTLFFSVRLTVLCTLFEYALSSNA 430
           V+  E L L  SV   V C LF+  LSS++
Sbjct: 384 VSKPEALRLSGSVVTKVTCELFQATLSSSS 413


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 580 AVGQLSGRVRGARRVRHNSDRNSIRKLNFIFFSTIN 473
           AV  L  R   ARR R N  + +   LN  F+S ++
Sbjct: 219 AVMILRSRFLDARRKRRNFSKQASEILNEYFYSHLS 254


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = -2

Query: 389 TACSGLPPSVRFGTDV 342
           T+CS +P +  +G+D+
Sbjct: 103 TSCSSVPTTASYGSDL 118


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -1

Query: 120 ALCQIVESLSRYWCKFGRMLFV 55
           ALC +++     W + G ++FV
Sbjct: 893 ALCVVLQLQENDWLQLGYLIFV 914


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
          protein.
          Length = 351

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 17 GLPVPASQPEPSSTNSIRP 73
          G+  PA+ P P++T+S  P
Sbjct: 26 GMTSPAAAPPPATTSSGSP 44


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 444 EHIRTTYREQLIVLKKIKLSFRILLRSLLCRT 539
           +H+ TTY +Q +   KI L      R++  RT
Sbjct: 342 KHVTTTYPKQPLRFGKILLLVSSTFRTISGRT 373


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +2

Query: 392 RYQNNNYQPSLNYALEDRAYSNNVQRTVNR 481
           R Q   YQ  LN  ++  A     QRT +R
Sbjct: 137 RCQYCRYQKCLNMGMKREAVQEERQRTKDR 166


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,240
Number of Sequences: 336
Number of extensions: 2546
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15666150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)