Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0162
(615 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 34 0.014
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 32 0.076
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr... 28 1.2
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy... 27 2.2
SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+] |Schizosacc... 27 2.8
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 26 3.8
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 26 3.8
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 26 3.8
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe... 26 5.0
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb... 25 6.6
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 6.6
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc... 25 6.6
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual 25 8.7
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom... 25 8.7
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 34.3 bits (75), Expect = 0.014
Identities = 36/152 (23%), Positives = 72/152 (47%), Gaps = 1/152 (0%)
Frame = +2
Query: 2 GALARGLPVPASQPEPSSTNSIRPNLHQYLERDSTIWHRAIQDDTYLKTPSADRLKPILS 181
G LA P P ++PE SST+ +P + + DS + ++ +D K+ ++ KP +
Sbjct: 441 GTLALKAPAPENKPEKSSTS--KPPVPENKAEDSVVLKSSVPED---KSENSIASKPSAT 495
Query: 182 QSSKWHSVEGLATHRPPTKHSLAAISEGTVMPSRSVIDIVPRPYDERIAMSHFKHLYQTE 361
+ +++ L + P K + + + +V +S D VP + ++ KH E
Sbjct: 496 EGIPENAI-ALQSSVPENKAEDSVVLKSSVPEDKSE-DSVP----SKSSVLEDKHENSVE 549
Query: 362 LKEEAPNTL-YRYQNNNYQPSLNYALEDRAYS 454
+ ++A ++L + Y PS+ E++ YS
Sbjct: 550 IDKKADDSLPSNNKTEGYTPSV--VREEKNYS 579
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 31.9 bits (69), Expect = 0.076
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = +2
Query: 83 QYLERDSTIWHRAIQDDTYLKTPSADRLKPILSQSS 190
+Y+ +TI A QDDTYL +P+ R P+L Q+S
Sbjct: 626 KYISSATTIHSSAAQDDTYLPSPT-KRKMPLLRQTS 660
>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 697
Score = 27.9 bits (59), Expect = 1.2
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Frame = +2
Query: 314 DERIAMSHFKHLYQTE---LKEEAPNTLYRYQ---NNNYQPSLNYALEDRAYSNNV-QRT 472
D + + H +L Q+ L TLYR Q NN Y+ L L +A RT
Sbjct: 603 DFKSLIQHTNNLLQSNNASLLRRLAATLYRIQIRENNGYKRVLLDRLRKKAILRAFPSRT 662
Query: 473 VNRTEKNKVKFSDTVTIAVMS 535
+NRTEK K+ D ++ S
Sbjct: 663 LNRTEKVKLYNEDAKFRSIFS 683
>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 922
Score = 27.1 bits (57), Expect = 2.2
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = +2
Query: 98 DSTIWHRAI-QDDTYLKTPSADRLKPILSQSSKWHSVEG 211
D IW A+ D TY T SAD + S S + V G
Sbjct: 477 DGAIWDLAVGHDGTYFATASADHTVKLWSLKSSFDFVPG 515
>SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+]
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 431
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/47 (27%), Positives = 20/47 (42%)
Frame = +2
Query: 185 SSKWHSVEGLATHRPPTKHSLAAISEGTVMPSRSVIDIVPRPYDERI 325
SSKWH GLA P + + + + I + Y++RI
Sbjct: 221 SSKWHVYAGLAILNPEAQRQIQQYASSVTELFKLAISGKAKEYEDRI 267
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 3.8
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +2
Query: 281 RSVIDIVPRPYDERIAMSHFKHLYQTELKEEAPNTLYRYQNN 406
R V + + PY IA +HF++ T L E + + Y +N
Sbjct: 526 RGVFEYLVMPYGISIAPAHFQYFINTILGEVKESHVVCYMDN 567
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 3.8
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +2
Query: 281 RSVIDIVPRPYDERIAMSHFKHLYQTELKEEAPNTLYRYQNN 406
R V + + PY IA +HF++ T L E + + Y +N
Sbjct: 526 RGVFEYLVMPYGISIAPAHFQYFINTILGEVKESHVVCYMDN 567
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 3.8
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +2
Query: 281 RSVIDIVPRPYDERIAMSHFKHLYQTELKEEAPNTLYRYQNN 406
R V + + PY IA +HF++ T L E + + Y +N
Sbjct: 526 RGVFEYLVMPYGISIAPAHFQYFINTILGEVKESHVVCYMDN 567
>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 687
Score = 25.8 bits (54), Expect = 5.0
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +2
Query: 383 TLYRYQNNNYQPSLNY-ALEDRAYSNNVQRTVN 478
+L+RY+N + P NY E+ + RTVN
Sbjct: 255 SLHRYENGRFYPGTNYGCAENCGEGPGLGRTVN 287
>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 406
Score = 25.4 bits (53), Expect = 6.6
Identities = 19/70 (27%), Positives = 26/70 (37%)
Frame = +2
Query: 401 NNNYQPSLNYALEDRAYSNNVQRTVNRTEKNKVKFSDTVTIAVMSDPPGSPDSARELADS 580
N+N SLN R N++Q+ N K K K S T + P + D
Sbjct: 36 NSNSSKSLNNDRISRTIENSLQKETNSDNKIK-KLSKTKSNPTNPKSEEDPSQICQSFDE 94
Query: 581 LPLCPPHNYL 610
+ P YL
Sbjct: 95 SNIITPSKYL 104
>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 25.4 bits (53), Expect = 6.6
Identities = 17/76 (22%), Positives = 36/76 (47%)
Frame = +2
Query: 323 IAMSHFKHLYQTELKEEAPNTLYRYQNNNYQPSLNYALEDRAYSNNVQRTVNRTEKNKVK 502
++ +F+ +++ K + +L Y N++ + +L SNN R +++ KN K
Sbjct: 604 LSSGYFQFCIESDSKFDEGTSL-EYPNSDKRILARASLTSGLKSNNTLRALSQDLKNCAK 662
Query: 503 FSDTVTIAVMSDPPGS 550
D T +++ GS
Sbjct: 663 SKDDSTTQNLTESLGS 678
>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 609
Score = 25.4 bits (53), Expect = 6.6
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +2
Query: 344 HLYQTELKEEAPNTLYRYQNNNYQ 415
H+ Q L+ ++PN L + N N+Q
Sbjct: 118 HIQQGVLQSDSPNELLEFANPNFQ 141
>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 706
Score = 25.0 bits (52), Expect = 8.7
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 124 SRRHLLEDAQR*STETDSESKLQMA 198
S+R EDA+R + DSE++LQ A
Sbjct: 242 SKRQAEEDAKRRNMANDSEAELQKA 266
>SPAC959.03c |||U3 snoRNP-associated protein
Utp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 520
Score = 25.0 bits (52), Expect = 8.7
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +2
Query: 269 VMPSRSVIDIVPRPYDERIAMSHFK 343
++PS SV+D+ PY++ + + H K
Sbjct: 347 LLPSSSVVDLHYCPYEDILGIGHAK 371
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,231,072
Number of Sequences: 5004
Number of extensions: 43598
Number of successful extensions: 182
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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