Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0162
(615 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0903 - 7103091-7103120,7104092-7104651,7105208-7105328,710... 33 0.14
05_01_0125 - 853691-853984,854027-854659 29 2.2
06_03_0140 + 17160406-17160517,17160605-17160718,17160800-171609... 29 3.9
02_01_0271 - 1799939-1800676 28 5.1
09_01_0002 - 81412-81944,82191-82539 28 6.8
09_06_0147 + 21195222-21195377,21195471-21195522,21196842-212043... 27 8.9
09_04_0694 - 19529084-19529201,19529464-19529544,19529637-195301... 27 8.9
04_04_1487 - 33919654-33920399,33920676-33920817 27 8.9
>01_01_0903 -
7103091-7103120,7104092-7104651,7105208-7105328,
7105545-7106567
Length = 577
Score = 33.5 bits (73), Expect = 0.14
Identities = 40/179 (22%), Positives = 80/179 (44%), Gaps = 14/179 (7%)
Frame = +2
Query: 50 SSTNSI-RPNLHQYLERDSTIWHRAIQDDTYLKTPSADRLKPILSQSSKWHSVEGLAT-- 220
SS N++ RP+ + S+ + K PS R K + S+S K +++ +
Sbjct: 285 SSANTVKRPDKKSMIASSSSSSTCRTRKPVARKAPSNSREKAVSSRSRKNSTIDDIVAYE 344
Query: 221 -HR-------PPTKHSLAAISEGTVMPSRSVIDIVPRPYDERIAMSHFKHLYQTELKEEA 376
HR P T+HS E +SV+D P + ++ + ++L+ T ++E+
Sbjct: 345 LHREFIQVDGPSTEHSATPSDESC----QSVVDWDTEPSIDGVSTLN-RNLFMTGIREDL 399
Query: 377 PNTLYRYQNNNYQPSLNYALEDRAYSNN---VQRTVNRTEKNKVKFSDTVTIAVMSDPP 544
+ +Y+ S+ + +R S N + + KN+V+ D +++ ++SD P
Sbjct: 400 --------SESYEASVTTSSAERTDSANGDPFHPSTHLVSKNEVEIKDEMSLLLLSDQP 450
>05_01_0125 - 853691-853984,854027-854659
Length = 308
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = +1
Query: 271 DAFAFSHRHRAATLRRKDRDVSFQTSVPNRTEGGSPEHAVPLPKQQLPA 417
D F +HR RAA RR + F P RT + +A L + PA
Sbjct: 60 DYFILAHRARAAAARRHPELLFFAPPEPRRTSSTTTFYACSLRGGEAPA 108
>06_03_0140 +
17160406-17160517,17160605-17160718,17160800-17160945,
17161009-17161222,17161725-17161962,17162089-17162239,
17162534-17162863
Length = 434
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = -1
Query: 600 CGGHSGRLSASSRAESGEPGGSDITAIVTVSEN-LTLFFSVRLTVL-CTL 457
CGGH RL +S + + P G D S++ + + SV + V+ CTL
Sbjct: 13 CGGHHRRLMGASSSSAPAPAGEDDAGKSGSSKDAMKIMVSVLVVVIFCTL 62
>02_01_0271 - 1799939-1800676
Length = 245
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/22 (59%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Frame = +1
Query: 244 AGGHQRGD-RDAFAFSHRHRAA 306
AGG R D +D FAF H H AA
Sbjct: 139 AGGRSRSDGKDKFAFLHHHAAA 160
>09_01_0002 - 81412-81944,82191-82539
Length = 293
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 259 RGDRDAFAFSHRHRAATLRRKDRDVS 336
RG+RD + F RHR T+R DVS
Sbjct: 63 RGERDMYYFRTRHRRDTVRAALYDVS 88
>09_06_0147 + 21195222-21195377,21195471-21195522,21196842-21204362,
21204453-21205031,21205176-21205484,21205638-21205718,
21205971-21206279,21207430-21207816,21207964-21208767,
21208856-21209218,21209437-21209667,21209934-21210278,
21210494-21210712,21210759-21210815,21210978-21211322,
21211538-21211756,21211803-21211859,21212022-21212366,
21212584-21212814,21213100-21213458
Length = 4322
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +2
Query: 179 SQSSKWHSVEGLATHRPPTKHSLAAISEGTVMPSRSVIDIVP 304
S+S WH+ + L P + + +S G MP+R D +P
Sbjct: 2267 SRSRWWHASKTLPDGTPISGDDVTGLSPGDQMPTRMDQDAIP 2308
>09_04_0694 -
19529084-19529201,19529464-19529544,19529637-19530136,
19530444-19530540,19530633-19530775,19531187-19531528,
19531810-19532031,19532292-19532330,19532386-19532601,
19533101-19533196,19533416-19533481,19533777-19533821,
19533903-19533965,19534274-19534344,19534599-19534699,
19534896-19534972,19535856-19535900
Length = 773
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/71 (25%), Positives = 31/71 (43%)
Frame = +2
Query: 311 YDERIAMSHFKHLYQTELKEEAPNTLYRYQNNNYQPSLNYALEDRAYSNNVQRTVNRTEK 490
+DE+ H +L + +K +A + R+ P+ NY L+ R S+ NRT
Sbjct: 305 HDEKSVARHTVNLLTSTIKADADQSDLRFCFRIISPTKNYTLQ-RLLSSPKGSGHNRTAS 363
Query: 491 NKVKFSDTVTI 523
FS + +
Sbjct: 364 ESSSFSSSTEL 374
>04_04_1487 - 33919654-33920399,33920676-33920817
Length = 295
Score = 27.5 bits (58), Expect = 8.9
Identities = 29/119 (24%), Positives = 45/119 (37%), Gaps = 3/119 (2%)
Frame = +1
Query: 91 GEGLDDLAQSHSRRHLLEDAQR*STETDSESKLQMAQR*GLSDAQAADEALAGGHQRGDR 270
GEG D R L + E ++ ++ Q D + + +GG GD
Sbjct: 110 GEGGDGTIGGGRARELADAGGEKVGEGENPGNDELEQLFHTVDELVGESSRSGGGVGGDE 169
Query: 271 --DAFAFSHRHRAATLRRKDRDVSFQTSVPNRTEGGSPEHAVPLPKQ-QLPAKSELRIG 438
A F R R V +R GG+ E VPLP++ ++ A E+ +G
Sbjct: 170 VDGAETFVEGGDKEGERAAPRRRRVGADVASRVCGGADEERVPLPRRAEVAAAGEIIVG 228
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,945,607
Number of Sequences: 37544
Number of extensions: 334119
Number of successful extensions: 1374
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1374
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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