Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0162
(615 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_36077| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.14
SB_37510| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_57513| Best HMM Match : rve (HMM E-Value=0.0064) 31 0.74
SB_39036| Best HMM Match : HSP9_HSP12 (HMM E-Value=6.2) 29 3.0
SB_48199| Best HMM Match : Lig_chan (HMM E-Value=0) 28 5.2
SB_9751| Best HMM Match : Helicase_C (HMM E-Value=3.4e-05) 28 5.2
SB_47894| Best HMM Match : CI-B14_5a (HMM E-Value=6.6) 28 5.2
SB_41024| Best HMM Match : DIL (HMM E-Value=1.3e-30) 28 5.2
SB_15435| Best HMM Match : Fic (HMM E-Value=7.5) 28 5.2
SB_14537| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_20844| Best HMM Match : Ion_trans (HMM E-Value=0) 28 6.9
SB_42375| Best HMM Match : Borrelia_orfA (HMM E-Value=2.2) 27 9.1
SB_39051| Best HMM Match : Gal_Lectin (HMM E-Value=2.5e-21) 27 9.1
SB_25066| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
>SB_36077| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 323
Score = 33.5 bits (73), Expect = 0.14
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 20 LPVPASQPEPSSTNSIRPNLHQYLERDSTIWH 115
+P P SQP + TNSI+ N ++ T+WH
Sbjct: 16 VPYPRSQPTLNRTNSIQENRESTSTKEKTLWH 47
>SB_37510| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 166
Score = 33.1 bits (72), Expect = 0.18
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = +2
Query: 332 SHFKHLYQTELKEEAPNTLYRYQNNNYQPSLNYAL--EDRAYSNNVQRTVNRTEKNKVKF 505
+H + Y + K+ + N Y N N + NY + + Y+ N ++ N T + K
Sbjct: 72 NHSNNNYTIDNKDNSSNNNYTINNKNNSRNNNYTISTSNNNYTTNYNKSKNFTTRTKTTT 131
Query: 506 SDTVT 520
S+T T
Sbjct: 132 SETTT 136
>SB_57513| Best HMM Match : rve (HMM E-Value=0.0064)
Length = 515
Score = 31.1 bits (67), Expect = 0.74
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +3
Query: 432 HWRTEHIRTTYREQLIVLKKIKLSFRILLRSLLCRTRRAPRTRPESW 572
H E + T REQ V+ ++L R ++CR +RAP +P W
Sbjct: 181 HCGQEQVLATLREQFWVVHARVAFKQVLTRCIVCRKQRAP--KPNRW 225
>SB_39036| Best HMM Match : HSP9_HSP12 (HMM E-Value=6.2)
Length = 513
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = +2
Query: 428 YALEDRAYSNNVQRTVNRTEKNKVKFSDTVTIAVMSDPPGSPDS 559
YAL+ S+ QRT EKN + +T T A+ S P PD+
Sbjct: 172 YALDTDQPSDPCQRTA--AEKNPIPLKETPTPALESAPAAMPDT 213
>SB_48199| Best HMM Match : Lig_chan (HMM E-Value=0)
Length = 771
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/37 (35%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Frame = -3
Query: 559 RVRGARRVRHNSDRNSIRKLNF--IFFSTINCSLYVV 455
++ GAR++R ++RN++ N + ++ +N SLYVV
Sbjct: 236 QMHGARKLRREAERNAMAAPNVTGLTYAVLNDSLYVV 272
>SB_9751| Best HMM Match : Helicase_C (HMM E-Value=3.4e-05)
Length = 798
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +2
Query: 38 QPEPSSTNSIRPNLHQYLERDSTIWHRAIQDDTYLKTPSADRLKPILSQSSKW 196
QP TN R + Q + DS++W +Q Y + DRL+ + SS W
Sbjct: 145 QPVLYDTNMRRDRVQQ-VRYDSSMWLDRLQQVRYDSSMWLDRLQQVRYDSSMW 196
>SB_47894| Best HMM Match : CI-B14_5a (HMM E-Value=6.6)
Length = 167
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +2
Query: 200 SVEGLATHRPPTKHS-LAAISEGTVMPSRSVIDIVPRPYDERIAMSHFKHLYQTELKEEA 376
S G+ T H+ LA + G +P+ P P + + +H + EL++
Sbjct: 63 STPGMTVPSTGTGHTPLAQSTPGMTVPTSETATPTPLPKERCLKHGKAEHSFTPELEQTV 122
Query: 377 PNTLYRYQNNNYQ 415
P+ + N+Y+
Sbjct: 123 PSCSHLISANHYK 135
>SB_41024| Best HMM Match : DIL (HMM E-Value=1.3e-30)
Length = 1440
Score = 28.3 bits (60), Expect = 5.2
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Frame = +2
Query: 392 RYQNNNYQPSLNYALEDRAYSNNVQR---TVNRTE-KNKVKFSDTVTIAVMSDPPGSP 553
R NN+ P +N A + Y NNV +V TE ++ K S I+ D P SP
Sbjct: 183 RSPNNSESPPINTARQIETYRNNVSSSPVSVRSTESEHSNKASPRFAISPSRDSPTSP 240
>SB_15435| Best HMM Match : Fic (HMM E-Value=7.5)
Length = 695
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +2
Query: 158 DRLKPILSQSSKWHSVEGLATHRPPTKHSLA 250
DRL L Q S+W EG RPPT+H +A
Sbjct: 481 DRLYTYLIQLSEW---EGWRISRPPTRHIVA 508
>SB_14537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 100
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = +2
Query: 377 PNTLYRYQNNNYQPSLNYALEDRAYSNNVQRTVNRTEKN 493
PNT Y+ NN YQPS Y R N + R + N
Sbjct: 1 PNTRYQ-PNNRYQPSTRYQPNTRYQPNTRYQPSTRYQPN 38
>SB_20844| Best HMM Match : Ion_trans (HMM E-Value=0)
Length = 2675
Score = 27.9 bits (59), Expect = 6.9
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -1
Query: 408 LLFW*RYSVFGASSFSSVWYRCL 340
LLFW +S+ G F+ ++++CL
Sbjct: 2141 LLFWLIFSILGVQLFAGMFFKCL 2163
>SB_42375| Best HMM Match : Borrelia_orfA (HMM E-Value=2.2)
Length = 475
Score = 27.5 bits (58), Expect = 9.1
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Frame = +2
Query: 314 DERIAMSHFKHLYQTELKEEAPNTLYR-YQN---NNYQPSLNYALEDRAYSNNVQRTVNR 481
D+RIA +HF L + E ++ P+ + Y+N N + LN D N+++ ++
Sbjct: 217 DKRIAGAHFSDLDRNEPPDDLPHEECKSYENEGKENDKYDLNLKKSDDKADLNLKKDDDK 276
Query: 482 TEKNKVKFSDTVTIAVMSD 538
+ N K D + + D
Sbjct: 277 ADLNLKKDDDKADLNLKKD 295
>SB_39051| Best HMM Match : Gal_Lectin (HMM E-Value=2.5e-21)
Length = 1405
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +2
Query: 149 PSADRLKPILSQSSKWHSVEGLATHRPPTKHSLAAISEGTVMPSRS 286
PSA+ LK + H+ + + HRP T +S A++EG P +
Sbjct: 441 PSAEPLKNPTDE----HTDDSVTPHRPLTVNSTRAVNEGCSQPDNT 482
>SB_25066| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1167
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +1
Query: 373 SPEHAVPLPKQQLPAKSELRIGGQSIFEQRTENS*SY*KK 492
+P H P P Q PAK G Q F+ TE + + KK
Sbjct: 248 NPPHTAPSPPQADPAKEATCPGCQKTFKLFTEGARGWNKK 287
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,616,293
Number of Sequences: 59808
Number of extensions: 352955
Number of successful extensions: 1472
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1471
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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