Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0162
         (615 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68319-4|CAA92702.1|  884|Caenorhabditis elegans Hypothetical pr...    31   0.65 
Z81041-2|CAB02787.4| 1403|Caenorhabditis elegans Hypothetical pr...    29   2.0  
U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z22173-2|CAA80126.1|  327|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical p...    28   4.6  
Z81587-9|CAB04708.2|  511|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z96047-4|CAB09414.1|  796|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z79604-3|CAD36502.1|  817|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z79604-2|CAB01900.1|  780|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U40427-5|AAP82652.1|  356|Caenorhabditis elegans Abnormal cell m...    27   8.1  
U40427-4|AAA81470.2|  362|Caenorhabditis elegans Abnormal cell m...    27   8.1  
AF332205-1|AAK17976.1|  817|Caenorhabditis elegans nuclear recep...    27   8.1  
AF332204-1|AAK17975.1|  519|Caenorhabditis elegans nuclear recep...    27   8.1  
AF150958-1|AAD43178.1|  362|Caenorhabditis elegans guidance prot...    27   8.1  

>Z68319-4|CAA92702.1|  884|Caenorhabditis elegans Hypothetical
           protein T23G7.4 protein.
          Length = 884

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
 Frame = +2

Query: 230 PTKHSLAAISEGTVMPSRSVIDIVPRPYDERIAMSHF---KHLYQTELKEEAPNTLYRYQ 400
           P + S   + E   +P R  I  VP+  DER A+      K + Q  L  + P+     +
Sbjct: 104 PLEESAVWVDETRTVPGREAIRSVPQIQDERDALGLLPSQKRMDQVLLSRDFPDCSGNLR 163

Query: 401 NNNYQPSLNYALEDRA 448
             N+ P   Y LE+ A
Sbjct: 164 MENFSPQW-YLLENHA 178


>Z81041-2|CAB02787.4| 1403|Caenorhabditis elegans Hypothetical protein
            C27A7.4 protein.
          Length = 1403

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = +2

Query: 401  NNNYQPSLNYALEDRAYSNNVQRTVNRTEKNKVKFSDTVTIAVMSDPPGSPDSARELADS 580
            N NY+ ++N+    + +S  VQ   NR  +   KF++ +T     D P   +  + L   
Sbjct: 1079 NQNYEKAVNFLCLAKEFSGAVQLCKNRNVRVSDKFAELMT-PTKDDMPNVQERKQVLETV 1137

Query: 581  LPLC 592
              LC
Sbjct: 1138 AELC 1141


>U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical
           protein C16A3.7 protein.
          Length = 1119

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 21/60 (35%), Positives = 30/60 (50%)
 Frame = +1

Query: 283 FSHRHRAATLRRKDRDVSFQTSVPNRTEGGSPEHAVPLPKQQLPAKSELRIGGQSIFEQR 462
           F+    AAT     + V F  SVP  T G S  H+    +QQ P+++  R GGQ   ++R
Sbjct: 86  FTFNPNAATFNPA-QSVLFDPSVPPPTIGAST-HSNQNSRQQEPSQNRRRRGGQQNTQRR 143


>Z22173-2|CAA80126.1|  327|Caenorhabditis elegans Hypothetical
           protein C15H7.4 protein.
          Length = 327

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 98  DSTIWHRAIQDDTYLKTPSADRLKPILSQSSKWHSVEGLAT 220
           D ++ ++   D    KTPS    KP+LS+S K    + LAT
Sbjct: 183 DKSVENKKGSDRNVKKTPSKTVTKPLLSESRKRKEAKTLAT 223


>Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical
           protein Y49E10.19 protein.
          Length = 1159

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 23/111 (20%), Positives = 48/111 (43%), Gaps = 1/111 (0%)
 Frame = +2

Query: 284 SVIDIVPRPYDERIAMSHFKHLYQTELKEEAPNTLYRYQNNNYQPSLNYALEDRAYSNNV 463
           +++   P+P+ + I  S F  ++ T     +P TL     + + PS + A+E      ++
Sbjct: 347 ALVSSSPKPFSKDIGRSMFSPVHFTPKSTSSPKTL---SESIFSPSKSAAVE-----GSI 398

Query: 464 QRTVNRTEKNKVKFSDTVTIAVMSDPPGSP-DSARELADSLPLCPPHNYLS 613
             T     + K+K S +  +     P  +P  + R +A   P     ++L+
Sbjct: 399 ATTRRLQFEEKLKKSSSANVTAPPAPTSAPVPTPRHVAPLAPTVAQQSHLT 449


>Z81587-9|CAB04708.2|  511|Caenorhabditis elegans Hypothetical
           protein T06G6.3a protein.
          Length = 511

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
 Frame = +2

Query: 311 YDERIAMSHFKHLYQTELKEE-APNTLYRYQNNNYQPSLN-----YALEDRAYSNNVQRT 472
           + E + +    +L + E+ EE A NT+ R    N +  L       A E R    + +R+
Sbjct: 20  FAESLKLQQRNNLLEMEVVEEKAANTMLRNDLKNCKGMLKEQEELLAAEKRKSPVSWERS 79

Query: 473 VNRTEKNKVKFSDTVTIAVMSDPPGSPDS 559
           +   +KN+    D+V +  M+  PG  +S
Sbjct: 80  LTPDKKNRDDLMDSVVLERMNIVPGDQES 108


>Z96047-4|CAB09414.1|  796|Caenorhabditis elegans Hypothetical
           protein DY3.5 protein.
          Length = 796

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = +2

Query: 350 YQTELKEEAPNTLYRYQNNNYQPSLNYALEDRAYSNNVQRTVNRT 484
           YQ   +  A ++  ++ + N QP + Y  +D  Y N    T   T
Sbjct: 224 YQPSQQSSASSSNLQFHSYNSQPGIQYGSQDSFYPNQAALTAAAT 268


>Z79604-3|CAD36502.1|  817|Caenorhabditis elegans Hypothetical
           protein ZK662.3b protein.
          Length = 817

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 16/64 (25%), Positives = 31/64 (48%)
 Frame = +2

Query: 2   GALARGLPVPASQPEPSSTNSIRPNLHQYLERDSTIWHRAIQDDTYLKTPSADRLKPILS 181
           GAL+  LP P   P  SS N + P + + +    ++ ++  Q    + T   D L  ++ 
Sbjct: 429 GALSTPLPPPIVPPGHSSINPVIPIIPKEMPVSVSLLNQLEQTPAEMVTVPKDMLMKLIQ 488

Query: 182 QSSK 193
           ++S+
Sbjct: 489 KNSR 492


>Z79604-2|CAB01900.1|  780|Caenorhabditis elegans Hypothetical
           protein ZK662.3a protein.
          Length = 780

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 16/64 (25%), Positives = 31/64 (48%)
 Frame = +2

Query: 2   GALARGLPVPASQPEPSSTNSIRPNLHQYLERDSTIWHRAIQDDTYLKTPSADRLKPILS 181
           GAL+  LP P   P  SS N + P + + +    ++ ++  Q    + T   D L  ++ 
Sbjct: 392 GALSTPLPPPIVPPGHSSINPVIPIIPKEMPVSVSLLNQLEQTPAEMVTVPKDMLMKLIQ 451

Query: 182 QSSK 193
           ++S+
Sbjct: 452 KNSR 455


>U40427-5|AAP82652.1|  356|Caenorhabditis elegans Abnormal cell
           migration protein13, isoform b protein.
          Length = 356

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 23  PVPASQPEPSSTNSIRPNLHQYLE 94
           P P   P PS+ +S  P LH + E
Sbjct: 290 PSPPKMPPPSAASSYTPRLHHHFE 313


>U40427-4|AAA81470.2|  362|Caenorhabditis elegans Abnormal cell
           migration protein13, isoform a protein.
          Length = 362

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 23  PVPASQPEPSSTNSIRPNLHQYLE 94
           P P   P PS+ +S  P LH + E
Sbjct: 296 PSPPKMPPPSAASSYTPRLHHHFE 319


>AF332205-1|AAK17976.1|  817|Caenorhabditis elegans nuclear receptor
           NHR-48 protein.
          Length = 817

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 16/64 (25%), Positives = 31/64 (48%)
 Frame = +2

Query: 2   GALARGLPVPASQPEPSSTNSIRPNLHQYLERDSTIWHRAIQDDTYLKTPSADRLKPILS 181
           GAL+  LP P   P  SS N + P + + +    ++ ++  Q    + T   D L  ++ 
Sbjct: 429 GALSTPLPPPIVPPGHSSINPVIPIIPKEMPVSVSLLNQLEQTPAEMVTVPKDMLMKLIQ 488

Query: 182 QSSK 193
           ++S+
Sbjct: 489 KNSR 492


>AF332204-1|AAK17975.1|  519|Caenorhabditis elegans nuclear receptor
           NHR-48 protein.
          Length = 519

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 16/64 (25%), Positives = 31/64 (48%)
 Frame = +2

Query: 2   GALARGLPVPASQPEPSSTNSIRPNLHQYLERDSTIWHRAIQDDTYLKTPSADRLKPILS 181
           GAL+  LP P   P  SS N + P + + +    ++ ++  Q    + T   D L  ++ 
Sbjct: 131 GALSTPLPPPIVPPGHSSINPVIPIIPKEMPVSVSLLNQLEQTPAEMVTVPKDMLMKLIQ 190

Query: 182 QSSK 193
           ++S+
Sbjct: 191 KNSR 194


>AF150958-1|AAD43178.1|  362|Caenorhabditis elegans guidance protein
           MIG-13 protein.
          Length = 362

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 23  PVPASQPEPSSTNSIRPNLHQYLE 94
           P P   P PS+ +S  P LH + E
Sbjct: 296 PSPPKMPPPSAASSYTPRLHHHFE 319


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,799,148
Number of Sequences: 27780
Number of extensions: 260932
Number of successful extensions: 1094
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)