Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0162
(615 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g27090.1 68415.m03255 expressed protein contains Pfam domains... 33 0.20
At1g27750.1 68414.m03391 ubiquitin system component Cue domain-c... 31 0.80
At5g52280.1 68418.m06488 protein transport protein-related low s... 29 1.9
At3g50670.2 68416.m05543 U1 small nuclear ribonucleoprotein 70 (... 29 1.9
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 29 1.9
At3g18035.1 68416.m02292 histone H1/H5 family protein contains P... 28 4.3
At1g45201.2 68414.m05185 lipase class 3 family protein Since thi... 28 4.3
At1g05940.1 68414.m00623 amino acid permease family protein low ... 28 4.3
At4g29700.1 68417.m04230 type I phosphodiesterase/nucleotide pyr... 28 5.7
At4g24600.1 68417.m03524 hypothetical protein 28 5.7
At3g63180.1 68416.m07097 expressed protein 28 5.7
At2g16090.1 68415.m01845 zinc finger protein-related contains si... 28 5.7
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID... 28 5.7
At1g76850.1 68414.m08943 expressed protein 27 7.5
At2g35100.1 68415.m04306 exostosin family protein contains Pfam ... 27 9.9
At2g28290.2 68415.m03434 chromatin remodeling protein, putative ... 27 9.9
At2g28290.1 68415.m03433 chromatin remodeling protein, putative ... 27 9.9
>At2g27090.1 68415.m03255 expressed protein contains Pfam domains,
PF04782: Protein of unknown function (DUF632) and
PF04783: Protein of unknown function (DUF630)
Length = 743
Score = 32.7 bits (71), Expect = 0.20
Identities = 16/67 (23%), Positives = 27/67 (40%)
Frame = +2
Query: 131 DTYLKTPSADRLKPILSQSSKWHSVEGLATHRPPTKHSLAAISEGTVMPSRSVIDIVPRP 310
DTY PS P K+ P +A ++ ++ PSRS+ + P
Sbjct: 101 DTYSPPPSPPSTSPFQVNHMKFKGFSSKKVEEKPPVSIIATVTSSSIPPSRSIEKMESTP 160
Query: 311 YDERIAM 331
++E +M
Sbjct: 161 FEESSSM 167
>At1g27750.1 68414.m03391 ubiquitin system component Cue
domain-containing protein very low similarity to ASC-1
complex subunit P100 [Homo sapiens] GI:12061187; contains
Pfam profile PF02845: CUE domain
Length = 1973
Score = 30.7 bits (66), Expect = 0.80
Identities = 27/96 (28%), Positives = 37/96 (38%)
Frame = +2
Query: 2 GALARGLPVPASQPEPSSTNSIRPNLHQYLERDSTIWHRAIQDDTYLKTPSADRLKPILS 181
G LA L PE + LH+ L+R T Q + S D+ K L
Sbjct: 1644 GFLAACLEAYNQNPEEVIQRILEGTLHEDLQRLDTSLETMPQPKSAPTLRSKDKGKGKLI 1703
Query: 182 QSSKWHSVEGLATHRPPTKHSLAAISEGTVMPSRSV 289
+S S + T +P T+ SL A S + R V
Sbjct: 1704 ESDTSSSASAIYTEKPITRPSLPASSASSATVGRFV 1739
>At5g52280.1 68418.m06488 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 853
Score = 29.5 bits (63), Expect = 1.9
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Frame = +1
Query: 238 ALAGGHQRGDRDAFAFSHRHRAATLRRKDRDVSFQTSVPNRTEGGSPEHAVPLPKQQLPA 417
A GH+R + D A S + R + SFQ + TE P + + + L
Sbjct: 219 ATRNGHRRSNTDWSASSTSDESYIESRNSPENSFQRGFSSVTESSDPIERLKMELEALRR 278
Query: 418 KSEL-RIGGQSIFEQRTENS 474
+SEL + QS+ +Q + S
Sbjct: 279 QSELSELEKQSLRKQAIKES 298
>At3g50670.2 68416.m05543 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 204
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 349 VPNRTEGGSPEHAVPLPKQQLPAKSELRI 435
V N E G PE+A P P+ +LP++ RI
Sbjct: 77 VSNFAEPGDPEYAPPKPEVELPSQKRERI 105
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 349 VPNRTEGGSPEHAVPLPKQQLPAKSELRI 435
V N E G PE+A P P+ +LP++ RI
Sbjct: 77 VSNFAEPGDPEYAPPKPEVELPSQKRERI 105
>At3g18035.1 68416.m02292 histone H1/H5 family protein contains Pfam
domain, PF00538: linker histone H1 and H5 family;similar
to HMG I/Y like protein (GI:15706274) [Glycine
max];similar to HMR1 protein (GI:4218141) [Antirrhinum
majus]; similar to high mobility group protein
(GI:1483173) [Canavalia gladiata]
Length = 480
Score = 28.3 bits (60), Expect = 4.3
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 391 PLPKQQLPAKSELRIGGQSIFEQRTENS 474
P P QQLP ++++ GQ I+EQ+ S
Sbjct: 193 PQPLQQLPPTNQVQANGQPIWEQQQVQS 220
>At1g45201.2 68414.m05185 lipase class 3 family protein Since this
genomic sequence region is unfinished, the annotated
gene may be missing a stop codon or start codon
Length = 479
Score = 28.3 bits (60), Expect = 4.3
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 9/42 (21%)
Frame = +2
Query: 293 DIVPR-PYDERIAMSH--------FKHLYQTELKEEAPNTLY 391
D+VPR P+D++ S+ F LY+ +++E+APN Y
Sbjct: 354 DVVPRVPFDDKYLFSYKHYGPCNSFNSLYKGKVREDAPNANY 395
>At1g05940.1 68414.m00623 amino acid permease family protein low
similarity to SP|P30823 High-affinity cationic amino
acid transporter-1 (CAT-1) {Rattus norvegicus}; contains
Pfam profile PF00324: Amino acid permease
Length = 569
Score = 28.3 bits (60), Expect = 4.3
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -1
Query: 303 GTMSMTEREGITVPSLMAASECFVGGLCVAKPST 202
GT++ G+T+ L+A + C + LC A+ S+
Sbjct: 75 GTVARDAGPGVTISFLLAGASCVLNALCYAELSS 108
>At4g29700.1 68417.m04230 type I phosphodiesterase/nucleotide
pyrophosphatase family protein similar to SP|P22413
Ectonucleotide pyrophosphatase/phosphodiesterase 1
(Plasma-cell membrane glycoprotein PC-1) [Includes:
Alkaline phosphodiesterase I (EC 3.1.4.1); Nucleotide
pyrophosphatase (EC 3.6.1.9) {Homo sapiens}; contains
Pfam profile PF01663: Type I phosphodiesterase /
nucleotide pyrophosphatase
Length = 461
Score = 27.9 bits (59), Expect = 5.7
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +2
Query: 308 PYDERI--AMSHFKHLYQTELKEEAPNTLYRYQNNNYQPSLNYALEDRAYSNNVQR 469
P +ER+ +SHF HL ++E P+ L Y + Q NY +D + V R
Sbjct: 190 PLEERVDSVLSHFDHL-----EDEVPDLLMLYFDEPDQSGHNYGPDDPRVTTAVSR 240
>At4g24600.1 68417.m03524 hypothetical protein
Length = 124
Score = 27.9 bits (59), Expect = 5.7
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +2
Query: 176 LSQSSKWHSVEGLATHRPPTKHSLAAISEGTVMPSRSVIDIVPRPYD 316
+ ++ K V+G +PP + I +G+V SR RPYD
Sbjct: 60 IKENEKSLQVQGFRLIKPPYRERKCVICDGSVQTSRHKRYPYERPYD 106
>At3g63180.1 68416.m07097 expressed protein
Length = 978
Score = 27.9 bits (59), Expect = 5.7
Identities = 34/119 (28%), Positives = 48/119 (40%), Gaps = 18/119 (15%)
Frame = +2
Query: 8 LARGLPVPASQPEPSSTNS---IRPN--LHQYLERDSTIWHRAIQDDTYLK--------- 145
L +G P+ ASQP P + I N LHQ+ + + + + YLK
Sbjct: 422 LVQGAPISASQPRPKRCATHFFIARNIQLHQHFLKTNHL-PTPNKGSVYLKGGDLRPTAG 480
Query: 146 TPSADRLKPILSQSSKWHSVEGLATHRPPTKHS----LAAISEGTVMPSRSVIDIVPRP 310
PS PILS +S+ H G P K S A+ + P + I +VP P
Sbjct: 481 NPSLHGSSPILSLNSQPHVRNGDNISAPNVKASESGHFASTRQNKPQPPPASISVVPAP 539
>At2g16090.1 68415.m01845 zinc finger protein-related contains
similarity to zinc finger proteins and Pfam domain,
PF01485: IBR domain
Length = 593
Score = 27.9 bits (59), Expect = 5.7
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +2
Query: 368 EEAPNTLYRYQN--NNYQPSLNYALEDRAYSNNVQRTVNRTEKNKVKFSD 511
E A L RY + N Y+ ++ + + SNN+ + V+ +EK +++ D
Sbjct: 342 ERAKRDLKRYMHYHNRYKAHIDSSKLEAKLSNNISKKVSISEKRELQLKD 391
>At1g67120.1 68414.m07636 midasin-related similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q12019)
[Saccharomyces cerevisiae]; similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
sapiens]; contains Prosite PS00017: ATP/GTP-binding site
motif A (P-loop)
Length = 5336
Score = 27.9 bits (59), Expect = 5.7
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 143 KTPSADRLKPILSQSSKWHSVE 208
K P +D L+PI+S +S W VE
Sbjct: 3722 KLPISDLLEPIISLASSWQKVE 3743
>At1g76850.1 68414.m08943 expressed protein
Length = 1090
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +2
Query: 116 RAIQDDTYLKTPSADRLKPILSQSSKWHSVEGLATHRPPTKHSLAAI 256
+A +D TY K PS+ KP+ + + + +A P K S AA+
Sbjct: 21 QAKRDLTYQKPPSSSARKPVANLVQQPRQQKPVAAAAAPPKKSAAAV 67
>At2g35100.1 68415.m04306 exostosin family protein contains Pfam
profile: PF03016 Exostosin family
Length = 447
Score = 27.1 bits (57), Expect = 9.9
Identities = 25/102 (24%), Positives = 39/102 (38%), Gaps = 7/102 (6%)
Frame = +2
Query: 314 DERIAMSHFKHLYQTELKEEAPNTLYRYQNNNYQP------SLNYALEDRAYSNNVQRTV 475
D I SH +L+ E+ E NTL + N Y+ L + + ++ ++
Sbjct: 228 DVVIPYSHRVNLFNGEIGVEDRNTLLFFMGNRYRKDGGKVRDLLFQVLEKEDDVTIKHGT 287
Query: 476 NRTEKNKVKFSDTVTIAVMSDPPGSPDSARELADSL-PLCPP 598
E + T +P G SA L DS+ LC P
Sbjct: 288 QSRENRRAATKGMHTSKFCLNPAGDTPSACRLFDSIVSLCVP 329
>At2g28290.2 68415.m03434 chromatin remodeling protein, putative (SYD)
similar to transcriptional activator HBRM [Homo sapiens]
GI:414117; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain; identical to cDNA putative chromatin
remodeling protein SYD (SPLAYED) GI:13603720
Length = 3529
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +2
Query: 140 LKTPSADRLKPILSQSSKWHSVEGLATHRPPTKHSLAAISEGTVMPS 280
+ PS +P + SS EG+ H +S ++EG+ +PS
Sbjct: 3344 INVPSGCSTEPQIQLSSSAEPEEGMHIHLEAAMNSETVVTEGSELPS 3390
>At2g28290.1 68415.m03433 chromatin remodeling protein, putative (SYD)
similar to transcriptional activator HBRM [Homo sapiens]
GI:414117; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain; identical to cDNA putative chromatin
remodeling protein SYD (SPLAYED) GI:13603720
Length = 3574
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +2
Query: 140 LKTPSADRLKPILSQSSKWHSVEGLATHRPPTKHSLAAISEGTVMPS 280
+ PS +P + SS EG+ H +S ++EG+ +PS
Sbjct: 3389 INVPSGCSTEPQIQLSSSAEPEEGMHIHLEAAMNSETVVTEGSELPS 3435
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,114,006
Number of Sequences: 28952
Number of extensions: 243886
Number of successful extensions: 887
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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