Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0159
(316 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein Sbp1|Schizosa... 27 0.51
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 26 1.2
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 26 1.5
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2... 26 1.5
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos... 26 1.5
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 25 2.0
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 25 2.0
SPCC584.02 |cuf2||Cu metalloregulatory transcription factor Cuf2... 25 2.0
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 25 2.0
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr... 25 2.0
SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces po... 25 2.0
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 25 2.0
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce... 25 2.0
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p... 25 2.7
SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 25 2.7
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 25 3.6
SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces pombe... 25 3.6
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc... 25 3.6
SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1 |... 25 3.6
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom... 24 4.7
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 24 6.3
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 23 8.3
>SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein
Sbp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 27.5 bits (58), Expect = 0.51
Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Frame = +1
Query: 115 SAEDVATEKTQ--KSLF-DGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKE 258
++EDVA+++T+ K++F DG+ K ++ T ++K D+DA A E
Sbjct: 22 ASEDVASKQTEEAKAVFGDGVAKQENKSGASTNDEKKPAEGDEDAEPASPE 72
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 26.2 bits (55), Expect = 1.2
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Frame = +1
Query: 85 VDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLK---HTETQEKNPLPDKDAIE 246
VD ++K+ S ED++ E + +L G E + SSQ + + ET K P P+ + IE
Sbjct: 145 VDEDDKL---SEEDLSKEDLETTL-KGDENYSSSQKEIYDNDETIPKPPSPEVEKIE 197
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 25.8 bits (54), Expect = 1.5
Identities = 10/43 (23%), Positives = 23/43 (53%)
Frame = +1
Query: 103 IVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPD 231
+ L S ED+ + T+ S+ + + +++HT + K +P+
Sbjct: 134 VALKSEEDIPSSVTRLSVVKLVNRVTYERMRHTMLEFKRSIPE 176
>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 426
Score = 25.8 bits (54), Expect = 1.5
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 144 GLLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQ 40
G ++G +S +LFIGVD G+ F LQ
Sbjct: 385 GEIAGTAYSSSGDSLFIGVDDPMLGGILEFRRPLQ 419
>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 25.8 bits (54), Expect = 1.5
Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Frame = +1
Query: 46 SQLEGFNTSCLR-DVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEK-N 219
S ++ F + L + + +K V+ + E ++ LF ++ +++ T+E N
Sbjct: 400 SYIQSFQNAILEGEREDVDKKVVEFLNPLVLELQERLLFVVQTAIETDIQRYSPTEEDLN 459
Query: 220 PLPDKDAIEAEKEKNKFLNGIENFDP 297
P+ D ++ + EK + N E DP
Sbjct: 460 PIADDKSLLFDLEKLRLNNDEEKLDP 485
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 2.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 146 WVFSVATSSADGSTIFSLVSTSRRQL 69
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 2.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 146 WVFSVATSSADGSTIFSLVSTSRRQL 69
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPCC584.02 |cuf2||Cu metalloregulatory transcription factor
Cuf2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 177
Score = 25.4 bits (53), Expect = 2.0
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 109 LPSAEDVATEKTQKSLFDGIEKFDSSQLKHTE 204
LP +ED+ + SL D + D+SQL E
Sbjct: 117 LPISEDILGYRKPLSLTDASNRIDASQLNEKE 148
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 2.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 146 WVFSVATSSADGSTIFSLVSTSRRQL 69
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
aminotransferase Eca39|Schizosaccharomyces pombe|chr
2|||Manual
Length = 380
Score = 25.4 bits (53), Expect = 2.0
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 145 QKSLFDGIEKFDSSQLKHTETQEKNPLPD 231
Q + G + DSS +K T +E PLP+
Sbjct: 3 QTAALHGPKPMDSSHIKVTNVKELKPLPE 31
>SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 25.4 bits (53), Expect = 2.0
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Frame = +1
Query: 85 VDTNEKIVLPSAEDVATEKTQKSLFD-GIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEK 261
VD + S + T+ Q + G+E + H T +N LP+ E E +K
Sbjct: 353 VDNTSSLKCDSYGNTKTKTNQLNCEQIGLEVISPKEFPHRTTSSRNSLPNNTTKELEMKK 412
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 2.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 146 WVFSVATSSADGSTIFSLVSTSRRQL 69
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 497
Score = 25.4 bits (53), Expect = 2.0
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -3
Query: 149 FWVFSVATSSADGSTIFSLVSTSRRQLVLKPSS 51
FW +S+ S G I SL + RQ + +PSS
Sbjct: 83 FWGYSLTFSHEGGPYIGSLANFGLRQTLGRPSS 115
>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 25.0 bits (52), Expect = 2.7
Identities = 11/49 (22%), Positives = 24/49 (48%)
Frame = +1
Query: 115 SAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEK 261
S++ AT+ + + + +DSS ++ K P+ + E+E E+
Sbjct: 112 SSKKKATDSVSDKIDESVASYDSSTHLRRSSRSKKPVNYNSSSESESEE 160
>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 398
Score = 25.0 bits (52), Expect = 2.7
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Frame = +1
Query: 37 DLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGI----EKFDSSQLKHTE 204
+L+S L+ SCL+D T+ K ++ +EKTQ+ +FD + +KF +S + +
Sbjct: 24 ELESILKDAKKSCLKDPTTSMKELV-----ACSEKTQQ-VFDDLKRTEKKFHTSLNRFGK 77
Query: 205 TQEK 216
T EK
Sbjct: 78 TLEK 81
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 24.6 bits (51), Expect = 3.6
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +1
Query: 169 EKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIEN 288
+ FD +K +EK L + AE EK++ N +E+
Sbjct: 74 KSFDEELVKFHNLEEKLQLTETKCRNAESEKSRVENELED 113
>SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 405
Score = 24.6 bits (51), Expect = 3.6
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -2
Query: 147 LGLLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQVCATCS 22
+ L + ++ + L+I +DV GVE F T TCS
Sbjct: 153 IALAALELLKYHQRVLYIDIDVHHGDGVEEFFYTTDRVMTCS 194
>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 581
Score = 24.6 bits (51), Expect = 3.6
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +1
Query: 76 LRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKH 198
L DVDT ++VL E Q+ DGI +FD+ +KH
Sbjct: 200 LADVDTENEVVLSVLEKWIKNVVQEYDIDGI-RFDA--IKH 237
>SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 24.6 bits (51), Expect = 3.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 74 VSVTSTPMKRLCFRLLKTSPLR 139
V +T +P + CFRL + PLR
Sbjct: 134 VDITLSPGEEKCFRLKRRIPLR 155
>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1325
Score = 24.2 bits (50), Expect = 4.7
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 130 ATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPD 231
+T QKSL D E D++ LK + + LPD
Sbjct: 83 STLDLQKSLIDADENVDANVLKDSASIRHVSLPD 116
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 23.8 bits (49), Expect = 6.3
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -1
Query: 217 SSPESRC-ASAGSNQTSRYRRIKTSGSSQWRRLQQTEAQS 101
S+P S AS+ ++ TS +SGSS W R EA S
Sbjct: 237 STPASTSYASSTTSATSTSTTSGSSGSSDWGRSSFYEADS 276
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 23.4 bits (48), Expect = 8.3
Identities = 17/70 (24%), Positives = 32/70 (45%)
Frame = +1
Query: 64 NTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAI 243
+T C R + NEK ++P E T + L E + Q + + + K ++ +
Sbjct: 1703 HTKCHRRNEKNEKEIIPDTCRFGDEFTHRCLMPSRENPKAVQYELLQKRRKEL---EEFM 1759
Query: 244 EAEKEKNKFL 273
+E+E+ FL
Sbjct: 1760 SSEQERIGFL 1769
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.307 0.127 0.345
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,203,435
Number of Sequences: 5004
Number of extensions: 21693
Number of successful extensions: 89
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
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