Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0156
         (522 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    31   0.079
SPBC216.03 |||conserved fungal protein|Schizosaccharomyces pombe...    27   1.3  
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S...    27   2.2  
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    27   2.2  
SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc...    26   3.0  
SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei...    26   3.0  
SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces po...    26   3.9  
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos...    25   6.8  
SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2...    25   9.0  

>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 31.5 bits (68), Expect = 0.079
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 283 PTLVKLVVPKGLNQPDMVIGKEKEEYLISKFK 378
           PTLV  +VP+GLN+ D     E E+ +++  K
Sbjct: 782 PTLVAYIVPQGLNKDDFDSATESEDIVVNGLK 813


>SPBC216.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 247

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 18/60 (30%), Positives = 24/60 (40%)
 Frame = +3

Query: 186 KKLRETTSITDLGEQTSNSKEDALXXXXXXXXXXXGEVGGPKGPEPTRYGDWERKGRVSD 365
           +K+   TS+  L + T N     L              GG  GPE TR  D+E   +V D
Sbjct: 42  EKVHGRTSVCSLEKATPNDIAQFLAEIHPDVVIFAAGAGGKGGPERTRAVDYEGAIKVYD 101


>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 108 NNDLNISLHYSILRPYFLTF 49
           NN ++IS  YS L PYF  F
Sbjct: 229 NNQISISTFYSSLDPYFRAF 248


>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 114 QQPPIEKENESVKKPESKRLSEFRKKLRETTSITDLG 224
           Q PP E+E     K E + + E + +L+   S+ ++G
Sbjct: 310 QLPPAERERVERGKQEKRAVEERKNQLKSPFSVANIG 346


>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 585

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 14/58 (24%), Positives = 29/58 (50%)
 Frame = +3

Query: 27  IMLWNAIRKLRNKALKLNNARICLSHYYSQQPPIEKENESVKKPESKRLSEFRKKLRE 200
           I+++    KL  K  ++  + + L   ++ + P+E+E E  K   S  + +  KKL +
Sbjct: 525 ILVFFICHKLYYKTKRITLSNMDLETDFAYKTPVEEEEEEEKSAGSLSIKQRMKKLSD 582


>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
           Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 18/65 (27%), Positives = 32/65 (49%)
 Frame = +3

Query: 6   RRSSTRNIMLWNAIRKLRNKALKLNNARICLSHYYSQQPPIEKENESVKKPESKRLSEFR 185
           R S+ R + + +   K+  +   LNN ++       +   +EKEN ++ K E+  L E  
Sbjct: 70  RDSTQRTLQIESLESKIGEQERDLNNEKLASETLREKTQLLEKENGAL-KVENGYLYEKS 128

Query: 186 KKLRE 200
           +KL E
Sbjct: 129 RKLEE 133


>SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 412

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +3

Query: 117 QPPIEKENESVKKPE-SKRLSEFRKKLRETTSITDLGEQTSNSKED 251
           Q PIE E  SV     +KR+  F KK ++   + ++    SNS  D
Sbjct: 15  QNPIEGELGSVIVEHLTKRIRNFTKKKQKILKLEEIAASDSNSLND 60


>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 591

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/55 (23%), Positives = 24/55 (43%)
 Frame = +3

Query: 81  NARICLSHYYSQQPPIEKENESVKKPESKRLSEFRKKLRETTSITDLGEQTSNSK 245
           +A + L H Y   PP       ++   +    + R+K  +  + +   EQT+N K
Sbjct: 329 SASMALEHEYFTTPPYPANPSELQSYSASHEYDKRRKREQRDANSHAFEQTANGK 383


>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 825

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/33 (27%), Positives = 20/33 (60%)
 Frame = -2

Query: 386 SIILNLEIRYSSFSFPITISGWFRPFGTTNFTS 288
           +I++++ ++YS F      +GW   FG+ N+ +
Sbjct: 520 TIVVSMLVQYSKFLKMGLETGWHGKFGSLNYVT 552


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,026,403
Number of Sequences: 5004
Number of extensions: 38350
Number of successful extensions: 126
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)