Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0156
         (522 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0412 + 2944652-2944977,2945406-2945517,2945569-2945670           35   0.034
06_03_1162 + 28093749-28093851,28093939-28093997,28094691-280947...    31   0.56 
08_02_1574 + 27959064-27959216,27959344-27959436,27959969-27960145     30   1.3  
03_01_0049 + 418957-419040,419599-419796,419918-420040,420172-42...    29   1.7  
01_01_0321 - 2584332-2584661,2584776-2584883,2584987-2585070,258...    29   1.7  
10_05_0040 - 8463585-8464396,8464664-8465273,8465708-8466169           29   3.0  
05_07_0311 - 29139883-29140359,29140641-29140788,29140883-291409...    28   4.0  
11_04_0019 + 12311674-12311886,12312746-12312878,12312918-123131...    27   9.1  

>06_01_0412 + 2944652-2944977,2945406-2945517,2945569-2945670
          Length = 179

 Score = 35.1 bits (77), Expect = 0.034
 Identities = 12/14 (85%), Positives = 14/14 (100%)
 Frame = +3

Query: 291 GEVGGPKGPEPTRY 332
           GE+GGP+GPEPTRY
Sbjct: 97  GEIGGPRGPEPTRY 110


>06_03_1162 +
           28093749-28093851,28093939-28093997,28094691-28094766,
           28094848-28094919,28095023-28095110,28095230-28095485,
           28095583-28095698,28096064-28096127,28096252-28096354,
           28096446-28096554,28097048-28097234
          Length = 410

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 26/116 (22%), Positives = 42/116 (36%)
 Frame = +3

Query: 21  RNIMLWNAIRKLRNKALKLNNARICLSHYYSQQPPIEKENESVKKPESKRLSEFRKKLRE 200
           R   +W+ + K   + +  +NA + + HY+  +  +E  N+         +S  R     
Sbjct: 22  RGPTIWDTLTKRPGRVIDFSNADVAVDHYHRYKEDVELMNDIGMDAYRFSISWSRIFPNG 81

Query: 201 TTSITDLGEQTSNSKEDALXXXXXXXXXXXGEVGGPKGPEPTRYGDWERKGRVSDF 368
           T    + G    NS  DAL                P+  E  RYG W     + DF
Sbjct: 82  TGEPNEEGLSYYNSLIDALLDKGIEPYVTLFHWDLPQALE-DRYGGWLNSEIIEDF 136


>08_02_1574 + 27959064-27959216,27959344-27959436,27959969-27960145
          Length = 140

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +3

Query: 132 KENESVKKPESKRLSEFRKKLRETTSITDLGEQTSNSKE 248
           KEN  V+K E +R+ + +KKL +  +  D G   ++ KE
Sbjct: 45  KENVYVQKMERERMEKRKKKLEKEKAEADKGNPAASDKE 83


>03_01_0049 +
           418957-419040,419599-419796,419918-420040,420172-420209,
           420334-420502,421115-424273,424367-424485,424915-425116
          Length = 1363

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 21/65 (32%), Positives = 33/65 (50%)
 Frame = +3

Query: 51  KLRNKALKLNNARICLSHYYSQQPPIEKENESVKKPESKRLSEFRKKLRETTSITDLGEQ 230
           K  +  LKL N R   S  Y  +   +K  E +++  +  LSE R+KL  + S+   G Q
Sbjct: 601 KCADLELKLLNFR---SQIYELEEKFQKSQEELEQ-RNLELSELRQKLDSSHSMAGEGVQ 656

Query: 231 TSNSK 245
           TS ++
Sbjct: 657 TSGAR 661


>01_01_0321 -
           2584332-2584661,2584776-2584883,2584987-2585070,
           2585162-2585221,2585322-2585421,2585504-2585906,
           2586183-2586480,2587526-2587711
          Length = 522

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +1

Query: 196 EKLHQSLILVNKLQIPRKMLCLLGPTILTPTLVKLVV 306
           E++ +S      L++P + +CL GP  L+  L++L V
Sbjct: 166 EQIRRSSHSFENLKLPERKICLSGPNKLSEELIRLTV 202


>10_05_0040 - 8463585-8464396,8464664-8465273,8465708-8466169
          Length = 627

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = +1

Query: 208 QSLILVNKLQIPRKMLCLLGPTILTPTLVKLVVPKGLNQPDMVIGKEKEEYLISKFKI 381
           Q L L+  + I    +C+    +  P L+ LV+P+G   PD  IG  K    +  F +
Sbjct: 399 QELKLLESIDIEWGSVCIPPDIVHLPHLIHLVIPEGTGLPD-GIGNLKSLITLRSFDL 455


>05_07_0311 -
           29139883-29140359,29140641-29140788,29140883-29140959,
           29141227-29141387,29141785-29142803,29142905-29142996,
           29143117-29143256,29143397-29143574
          Length = 763

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 18/53 (33%), Positives = 30/53 (56%)
 Frame = +3

Query: 42  AIRKLRNKALKLNNARICLSHYYSQQPPIEKENESVKKPESKRLSEFRKKLRE 200
           A+++ R K L+LN  R       S  PP+ + ++SV + ES  ++E R  +RE
Sbjct: 156 AMKRSRPKVLRLNLVRSPPKESKSPLPPLPELSDSVGETESS-INEQRCPIRE 207


>11_04_0019 +
           12311674-12311886,12312746-12312878,12312918-12313125,
           12313342-12313558,12313564-12313848
          Length = 351

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/38 (28%), Positives = 25/38 (65%)
 Frame = +1

Query: 196 EKLHQSLILVNKLQIPRKMLCLLGPTILTPTLVKLVVP 309
           +K+H ++ L++ + +P+ +   L  T+L PT ++L +P
Sbjct: 173 QKIHINVPLLDAIVMPKDVFDKLNFTVLAPTPMRLQLP 210


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,214,653
Number of Sequences: 37544
Number of extensions: 216135
Number of successful extensions: 550
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)