Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0156
(522 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26791| Best HMM Match : DUF1674 (HMM E-Value=6.3e-20) 56 1e-08
SB_320| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_39230| Best HMM Match : SNF2_N (HMM E-Value=1.40004e-41) 30 1.3
SB_51677| Best HMM Match : DUF327 (HMM E-Value=0.89) 29 1.8
SB_21796| Best HMM Match : COLFI (HMM E-Value=0) 27 7.1
SB_52979| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_23426| Best HMM Match : NHL (HMM E-Value=1.1e-19) 27 9.4
SB_50377| Best HMM Match : NICE-3 (HMM E-Value=1.3) 27 9.4
SB_50376| Best HMM Match : DUF941 (HMM E-Value=0.85) 27 9.4
SB_30411| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_26791| Best HMM Match : DUF1674 (HMM E-Value=6.3e-20)
Length = 112
Score = 56.4 bits (130), Expect = 1e-08
Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Frame = +3
Query: 126 IEKENESVKKPESKRLSEFRKKLRETTSITDLGEQTSNSKE-DALXXXXXXXXXXXGEVG 302
I++ + ++ + S+ S+ + + + TD KE D GE
Sbjct: 31 IQRGSVTLSQQFSRSFSDKTHNAKSSDAKTDGESSVEEEKEPDPFAPFPDDVNPETGERN 90
Query: 303 GPKGPEPTRYGDWERKGRVSDF 368
GP+GPEPTRYGDWERKGR DF
Sbjct: 91 GPRGPEPTRYGDWERKGRCIDF 112
>SB_320| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1040
Score = 29.9 bits (64), Expect = 1.3
Identities = 20/53 (37%), Positives = 28/53 (52%)
Frame = +3
Query: 33 LWNAIRKLRNKALKLNNARICLSHYYSQQPPIEKENESVKKPESKRLSEFRKK 191
L N RKL +L N + L + Y Q+ IEKE + + E +RLS+ KK
Sbjct: 305 LSNNERKLAETENQLQNKNLELEYEYEQKAKIEKERDKL-VIEVERLSDEMKK 356
Score = 27.9 bits (59), Expect = 5.4
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Frame = +3
Query: 48 RKLRNKAL-KLNNAR----ICLSHYYSQQPPIEKENESVKKPESKRLSEFRKKLRETTSI 212
R+++N +L K+N +R L + +Q I KENE K + K + + +KK+ E +
Sbjct: 595 RQIQNLSLEKVNESRDDEITELENELEEQREIIKENEEKLKEKEKEIEKLKKKIIELSDK 654
Query: 213 TDLGEQTSNSKEDAL 257
E + N E L
Sbjct: 655 LKDMETSRNKVETKL 669
>SB_39230| Best HMM Match : SNF2_N (HMM E-Value=1.40004e-41)
Length = 1682
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/39 (30%), Positives = 26/39 (66%)
Frame = +3
Query: 129 EKENESVKKPESKRLSEFRKKLRETTSITDLGEQTSNSK 245
E E+E+ ++P++ S+ R+K+R+ + LGE+T ++
Sbjct: 699 ESEDENEEEPDTPSKSKGRRKIRKLLTDEKLGEETKKAR 737
>SB_51677| Best HMM Match : DUF327 (HMM E-Value=0.89)
Length = 655
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -1
Query: 375 EFRNQILFLFFPNHHIWLVQALWDHQLHQCW 283
E RN I+F H+ LV L+D Q++QC+
Sbjct: 348 EQRNGIVFYEDDKRHLKLVGKLYDQQIYQCY 378
>SB_21796| Best HMM Match : COLFI (HMM E-Value=0)
Length = 1239
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -3
Query: 451 LTFITMLSFCVTQELRDNSKNKA*F 377
+++ T+ SFC+TQ DN+ NK F
Sbjct: 1005 VSYNTLGSFCITQRTGDNNANKQMF 1029
>SB_52979| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 416
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +1
Query: 106 ITHNSHRSKKKMKV*KNLSQNDYLSLEKN*EKLHQSLILVNKLQIPR 246
+TH + + ++V N S YL+L N + H +L L N PR
Sbjct: 146 LTHGNQETPSNIEVHSNQSATSYLTLPNN-QVTHGNLDLPNNQVTPR 191
>SB_23426| Best HMM Match : NHL (HMM E-Value=1.1e-19)
Length = 566
Score = 27.1 bits (57), Expect = 9.4
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Frame = +3
Query: 15 STRNIMLWNAIRKLRNKALKLNNARICLSHYYSQ-QPPIEKENESVKKPESKRLSEFRKK 191
ST N + NA + A + + C++ + Q I + + K +K +EF K+
Sbjct: 104 STLNQLGKNAENAKKEVAKEADKLISCINASKKELQSRITTLKDELAKDMNKEKAEFEKR 163
Query: 192 LRETTSITDLGEQTSNSKEDAL 257
L+ET + + + NS + L
Sbjct: 164 LKETKKVREDAAKYMNSPDSKL 185
>SB_50377| Best HMM Match : NICE-3 (HMM E-Value=1.3)
Length = 580
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +3
Query: 99 SHYYSQQPPIEKENESVKKPESKRLSEFRKKLRETTSITDLGEQTSN 239
S Y SQ P+E N + + P + R K ++ D G TSN
Sbjct: 51 SDYGSQDMPMEAVNIATEGPRESYCVDIRNKGNLVVTLGDDGAHTSN 97
>SB_50376| Best HMM Match : DUF941 (HMM E-Value=0.85)
Length = 608
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +3
Query: 99 SHYYSQQPPIEKENESVKKPESKRLSEFRKKLRETTSITDLGEQTSN 239
S Y SQ P+E N + + P + R K ++ D G TSN
Sbjct: 77 SDYGSQDMPMEAVNIATEGPRESYCVDIRNKGNLVVTLGDDGAHTSN 123
>SB_30411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 710
Score = 27.1 bits (57), Expect = 9.4
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Frame = +3
Query: 15 STRNIMLWNAIRKLRNKALKLNNARICLSHYYSQ-QPPIEKENESVKKPESKRLSEFRKK 191
ST N + NA + A + + C++ + Q I + + K +K +EF K+
Sbjct: 213 STLNQLGKNAENAKKEVAKEADKLISCINASKKELQSRITTLKDELAKDMNKEKAEFEKR 272
Query: 192 LRETTSITDLGEQTSNSKEDAL 257
L+ET + + + NS + L
Sbjct: 273 LKETKKVREDAAKYMNSPDSKL 294
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,228,986
Number of Sequences: 59808
Number of extensions: 256696
Number of successful extensions: 721
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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