Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0156
         (522 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   1.9  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   1.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.5  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   2.5  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    21   7.7  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 351 LFFPNHHIWLVQAL 310
           +F P+H +WLV  L
Sbjct: 1   MFIPSHQVWLVGLL 14


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 351 LFFPNHHIWLVQAL 310
           +F P+H +WLV  L
Sbjct: 1   MFIPSHQVWLVGLL 14


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +3

Query: 66  ALKLNNARICLSHYYSQQPP-IEKENESVKKPESKRLSEFRKKLRETT 206
           ++  N+ R   S Y  ++P      NE++ +P SKR  +  KK +  T
Sbjct: 33  SISRNSNRSESSGYCGRRPSTFGSSNEALPQPISKRKDKEHKKKKSKT 80


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +3

Query: 66  ALKLNNARICLSHYYSQQPP-IEKENESVKKPESKRLSEFRKKLRETT 206
           ++  N+ R   S Y  ++P      NE++ +P SKR  +  KK +  T
Sbjct: 33  SISRNSNRSESSGYCGRRPSTFGSSNEALPQPISKRKDKEHKKKKSKT 80


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 259 LLGPTILTPTLVKLVVPKGLN 321
           LLG T +   ++KL+  KG+N
Sbjct: 116 LLGLTCMIQEVLKLMKKKGIN 136


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,013
Number of Sequences: 438
Number of extensions: 2730
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)