Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0156
         (522 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g67490.1 68418.m08511 expressed protein                             58   4e-09
At5g49670.1 68418.m06150 hypothetical protein                          27   5.8  
At5g08570.1 68418.m01020 pyruvate kinase, putative similar to py...    27   7.7  

>At5g67490.1 68418.m08511 expressed protein
          Length = 108

 Score = 58.0 bits (134), Expect = 4e-09
 Identities = 21/26 (80%), Positives = 25/26 (96%)
 Frame = +3

Query: 291 GEVGGPKGPEPTRYGDWERKGRVSDF 368
           GE+GGP+GPEPTRYGDWE++GR SDF
Sbjct: 83  GEIGGPRGPEPTRYGDWEQRGRCSDF 108


>At5g49670.1 68418.m06150 hypothetical protein 
          Length = 1184

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +3

Query: 123  PIEKENESVKKPESKRLSEFRKKLRETTSITDLGEQ 230
            PI+KE+ + KKP SK++   R  +R+   I D+ E+
Sbjct: 947  PIKKESSTPKKPGSKKVGRIRFGIRKL--IFDIEEE 980


>At5g08570.1 68418.m01020 pyruvate kinase, putative similar to
           pyruvate kinase, cytosolic isozyme [Glycine max]
           SWISS-PROT:Q42806
          Length = 510

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +1

Query: 220 LVNKLQIPR-KMLCLLGPTILTPTLVKLVVPKGLNQPDMVIGKEKEEY 360
           L N  +IP+ K++C LGP   T ++++ ++  G+N           EY
Sbjct: 13  LPNDGRIPKTKIVCTLGPASRTVSMIEKLLKAGMNVARFNFSHGSHEY 60


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,316,728
Number of Sequences: 28952
Number of extensions: 191578
Number of successful extensions: 597
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)