Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0153
         (431 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    24   0.54 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   0.94 
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   1.6  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          20   8.8  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       20   8.8  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    20   8.8  

>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 24.2 bits (50), Expect = 0.54
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -3

Query: 108 KFLETLGSNATKAYDLRSLLFLR 40
           +FLE  G  A  A DLR  LF R
Sbjct: 379 RFLEPFGVMADPAVDLRDPLFFR 401


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.4 bits (48), Expect = 0.94
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -1

Query: 335  DNPNSACGS*REPALKAIVTRVTGEPLSKAATN 237
            D+  + CG  + P LK +   + G P   + TN
Sbjct: 2666 DDFKNRCGCGKHPLLKTLNNELRGTPSDISVTN 2698


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 316 QAELGLSHVLRSAAGLTTKNISSFL 390
           QAE  LS  +   A L T+N SS L
Sbjct: 259 QAEFTLSGQVMKYAALATENFSSLL 283


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 5/25 (20%), Positives = 14/25 (56%)
 Frame = +2

Query: 83  LLPKVSKNLRKWHPKLSSPPLFVML 157
           ++P++   +  W+P   + P+ V +
Sbjct: 521 IMPRIQAEVNIWNPLTDTIPIHVWI 545


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 252 RQRFPSYPCHN 284
           R+R  S PCHN
Sbjct: 185 RRRASSNPCHN 195


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 6/17 (35%), Positives = 9/17 (52%)
 Frame = +3

Query: 153 CYDQGLRPSCAGSKERC 203
           C   G+RP C   + +C
Sbjct: 248 CLSVGMRPECVVPEVQC 264


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,014
Number of Sequences: 336
Number of extensions: 1716
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9565283
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)