Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0153
(431 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core ... 36 0.002
SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizo... 29 0.40
SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp... 29 0.40
SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida... 28 0.70
SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr 1|||M... 27 1.6
SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1... 26 2.2
SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomy... 26 2.8
SPBC13E7.08c |||RNA polymerase II associated Paf1 complex |Schiz... 25 3.8
SPAC824.08 |gda1|gdp1|guanosine-diphosphatase Gda1|Schizosacchar... 25 6.6
SPAC25G10.05c |his1||ATP phosphoribosyltransferase |Schizosaccha... 25 6.6
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa... 24 8.7
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo... 24 8.7
>SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core
protein Qcr2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 426
Score = 36.3 bits (80), Expect = 0.002
Identities = 19/51 (37%), Positives = 30/51 (58%)
Frame = +1
Query: 277 VTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVS 429
+++ AGSRY+P A G+SH+L A TT+ S+ I R+ +G +S
Sbjct: 45 LSVVINAGSRYQPDA--GVSHLLEKFAFKTTEERSALRITRESELLGGQLS 93
>SPCC1682.10 |rpn8||19S proteasome regulatory subunit
Rpn8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 324
Score = 28.7 bits (61), Expect = 0.40
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Frame = +1
Query: 199 DVRIQSSVLPNKTFVAA---LDNGSPVTRVTIAFKAGSRYEPQAELGLSHVLRSAAGLTT 369
DV+ +S LP + A D+GS +R + + E E+G+ H+LR +
Sbjct: 132 DVKPKSVGLPTNAYFAIDEIEDDGSKSSRTFVHLPSSIEAEEAEEIGVEHLLRDTRDASV 191
Query: 370 KNISSFLIQRKLSQIG 417
+++ + Q+ S G
Sbjct: 192 GTLATRVTQQAQSLQG 207
>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
beta subunit Qcr1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 457
Score = 28.7 bits (61), Expect = 0.40
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +1
Query: 277 VTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVS 429
V + AGSR E G +H L A TKN S ++ + GA+++
Sbjct: 46 VLVGVDAGSRAETAKNNGAAHFLEHLAFKGTKNRSQKALELEFENTGAHLN 96
>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase
complex alpha subunit Mas2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 494
Score = 27.9 bits (59), Expect = 0.70
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 292 KAGSRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIG 417
KAGSRYE + G+SH + A T+ ++ KL +G
Sbjct: 74 KAGSRYETKKFSGVSHFMDRLAFQATERTPVGEMKAKLENLG 115
>SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 274
Score = 26.6 bits (56), Expect = 1.6
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = -1
Query: 329 PNSACGS*REPALKAIVTRVTGEPLSKAATNVLLGKTLDWILTSFFTAGAA 177
PN ACG+ R+ + + T ++ + +A N LDW + S + A+
Sbjct: 202 PNCACGAKRQLEFQILPTLISSMNIDHSAKN-----ALDWGILSIYVCSAS 247
>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 996
Score = 26.2 bits (55), Expect = 2.2
Identities = 21/80 (26%), Positives = 34/80 (42%)
Frame = +1
Query: 187 AVKKDVRIQSSVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELGLSHVLRSAAGLT 366
A + VR+Q LP+ FV GSP Q +LG + + + G+T
Sbjct: 857 APHRAVRLQIEDLPSNVFVTNRGRGSPA--------------DQYDLGAAQFITAVNGVT 902
Query: 367 TKNISSFLIQRKLSQIGAYV 426
T N+ F+ + + +YV
Sbjct: 903 TLNLEDFVREIRKIDDNSYV 922
>SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 25.8 bits (54), Expect = 2.8
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 74 FVALLPKVSKNLRKWHPKLSSPPLFVMLRSGATPKL 181
FVA L V + L +WH KL F ++ PK+
Sbjct: 70 FVADLNGVYRQLLRWHAKLPRVQPFYAVKCNPDPKV 105
>SPBC13E7.08c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 25.4 bits (53), Expect = 3.8
Identities = 16/62 (25%), Positives = 27/62 (43%)
Frame = +1
Query: 211 QSSVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKNISSFL 390
Q+ ++ TFV A + RV +FK+ + P A + + LTT + S
Sbjct: 174 QNKLISQPTFVTASHEAQHLLRVQTSFKSSFTFLPSAINTATRSKLPSMRLTTVQVPSRS 233
Query: 391 IQ 396
+Q
Sbjct: 234 VQ 235
>SPAC824.08 |gda1|gdp1|guanosine-diphosphatase
Gda1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 556
Score = 24.6 bits (51), Expect = 6.6
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +1
Query: 178 AAPAVKKDVRIQSSVLPNKTFVAALDNGSPVTRVTIAFKAGS 303
A + KDV SS+ + VA DN PV + + AGS
Sbjct: 102 APTSAAKDVTFSSSIDSDDCSVA-YDNSKPVRQYVLMIDAGS 142
>SPAC25G10.05c |his1||ATP phosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 310
Score = 24.6 bits (51), Expect = 6.6
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 326 NSACGS*REPALKAIVTRVTG 264
+S C S EP L+ I+TR+ G
Sbjct: 211 SSNCSSELEPLLQTIITRIRG 231
>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 24.2 bits (50), Expect = 8.7
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +2
Query: 275 VSQSPSK---LALVMNHKLNWDCRMYYDQLLD*QPRILV 382
++ PSK + +V+NH L WD D L+D R V
Sbjct: 919 IAFEPSKRPTIEVVLNHPLFWDYAKKLDFLIDVSDRFEV 957
>SPAC110.02 |pds5||cohesin-associated protein
Pds5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1205
Score = 24.2 bits (50), Expect = 8.7
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = +3
Query: 60 VNHKPLLRYYLKFLKTYENGIQNS 131
V + LL YY++ K Y G+ ++
Sbjct: 509 VKYSELLNYYIECCKNYNGGVMDN 532
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,622,654
Number of Sequences: 5004
Number of extensions: 30191
Number of successful extensions: 87
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -