Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0153
         (431 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12959| Best HMM Match : Peptidase_M16_C (HMM E-Value=1e-14)         56   9e-09
SB_40817| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.6e-36)       32   0.23 
SB_54629| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     31   0.40 
SB_2774| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.2  
SB_16340| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_29852| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.8  
SB_40775| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.8  
SB_15453| Best HMM Match : Prenyltrans (HMM E-Value=0)                 28   3.8  
SB_33549| Best HMM Match : Collagen (HMM E-Value=2e-05)                28   3.8  

>SB_12959| Best HMM Match : Peptidase_M16_C (HMM E-Value=1e-14)
          Length = 593

 Score = 56.4 bits (130), Expect = 9e-09
 Identities = 28/80 (35%), Positives = 49/80 (61%)
 Frame = +1

Query: 178 AAPAVKKDVRIQSSVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELGLSHVLRSAA 357
           A  +V++   +Q + L N   VA+L+  SP++RV + F AGSRYE  + LG++H+LR+AA
Sbjct: 20  AKGSVRERQTVQVTTLDNGLKVASLETYSPISRVGLFFDAGSRYETDSNLGITHMLRNAA 79

Query: 358 GLTTKNISSFLIQRKLSQIG 417
            L         + ++++ +G
Sbjct: 80  YLLLDFKGKHFVGKRMALVG 99


>SB_40817| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.6e-36)
          Length = 888

 Score = 31.9 bits (69), Expect = 0.23
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +1

Query: 217 SVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKNISSF-LI 393
           + LPN   VA+ ++    + V +    GSRYE     G++HV+   A  +T    S   I
Sbjct: 420 TTLPNGIKVASEESFGQFSTVGVVIDGGSRYEVDHPNGVTHVIEKMAFQSTAKFPSHDDI 479

Query: 394 QRKLSQIG 417
            ++L  +G
Sbjct: 480 MQELEPVG 487


>SB_54629| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1296

 Score = 31.1 bits (67), Expect = 0.40
 Identities = 19/51 (37%), Positives = 25/51 (49%)
 Frame = +3

Query: 48  REDSVNHKPLLRYYLKFLKTYENGIQNSRRPLYSSCYDQGLRPSCAGSKER 200
           R D VN +  L   L+  +  E GI   RR LYS C+D+ +R       ER
Sbjct: 135 RLDVVNLQEQLDMRLQQRQARETGICPVRRELYSQCFDELIRQVTINCAER 185


>SB_2774| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 322

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
 Frame = +1

Query: 199 DVRIQSSVLPNKTFVAAL---DNGSPVTRVTIAFKAGSRYEPQAELGLSHVLRSAAGLTT 369
           D + +   LP   +VA     D+G+P T+      +    E   E+G+ H+LR    LT 
Sbjct: 114 DAKPKDLRLPTDAYVAVEEVHDDGTPTTKTFEHIPSEIGAEEAEEVGVEHLLRDIKNLTA 173

Query: 370 KNISSFLIQRKLSQIGAY 423
             +S  +  +  S  G +
Sbjct: 174 GTLSQRITNQLTSLKGLH 191


>SB_16340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 330

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 135 DESFGCHFRKFLETLGSNATKAYDLRSLLFLRKSLG 28
           DE F    RKF+E + S   +  D+  L+ + KSLG
Sbjct: 26  DERFLFQSRKFMEMINSAVDRLNDISLLVMILKSLG 61


>SB_29852| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 836

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = +1

Query: 211 QSSVLPNKTFVAALDNGSPVTRVTIAFKAGS 303
           Q S L N T+    DNGSP+T V I    GS
Sbjct: 546 QFSHLVNLTWKLGRDNGSPITHVIIQQHVGS 576


>SB_40775| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 712

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = -3

Query: 168 APDRNMTNKGGDESFGCHFRKFLETLGSNATKAYDLRSLLFLR 40
           A +R M  +GG + FG  F K++ET  S+ATK      L  LR
Sbjct: 533 AGERAMLVRGGGKDFGICFGKWIET--SDATKKKTPLDLFRLR 573


>SB_15453| Best HMM Match : Prenyltrans (HMM E-Value=0)
          Length = 2376

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = +3

Query: 45  GREDSVNHKPLLRYYLKFLKTYENGIQNSRRPLYSSCYDQGL 170
           G+E  VN K LLR+ +      E G Q     L   CY   L
Sbjct: 239 GKEHIVNLKQLLRWAVNRQMKAEGGFQGRTNKLVDGCYSYWL 280


>SB_33549| Best HMM Match : Collagen (HMM E-Value=2e-05)
          Length = 346

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
 Frame = +2

Query: 83  LLPKVSKNLRKWHP-----KLSSPPLFVMLRSGATPKLR 184
           L P+VSK L+ WH       +SSPP   + R G   K++
Sbjct: 230 LQPRVSKYLKVWHECIPANDISSPPFQRLKREGLADKVK 268


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,205,372
Number of Sequences: 59808
Number of extensions: 234629
Number of successful extensions: 542
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 822495283
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)