Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0153
         (431 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g16480.1 68416.m02103 mitochondrial processing peptidase alph...    38   0.002
At1g51980.1 68414.m05863 mitochondrial processing peptidase alph...    37   0.005
At3g02090.2 68416.m00175 mitochondrial processing peptidase beta...    28   3.1  
At3g02090.1 68416.m00174 mitochondrial processing peptidase beta...    28   3.1  
At5g56730.1 68418.m07080 peptidase M16 family protein / insulina...    27   4.1  
At3g21580.2 68416.m02722 expressed protein                             27   5.5  
At5g03800.1 68418.m00347 exostosin family protein / pentatricope...    26   9.6  
At1g69360.1 68414.m07960 expressed protein                             26   9.6  

>At3g16480.1 68416.m02103 mitochondrial processing peptidase alpha
           subunit, putative similar to mitochondrial processing
           peptidase alpha subunit, mitochondrial precursor,
           Alpha-MPP (Ubiquinol-cytochrome C reductase subunit II)
           [Potato] SWISS-PROT:P29677
          Length = 499

 Score = 38.3 bits (85), Expect = 0.002
 Identities = 21/75 (28%), Positives = 37/75 (49%)
 Frame = +1

Query: 205 RIQSSVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKNISS 384
           +++++ LPN   +A   + +P   + +    GS YE     G +H+L   A  +T N S 
Sbjct: 73  KLKTTTLPNGLTIATEMSPNPAASIGLYVDCGSIYETPQFRGATHLLERMAFKSTLNRSH 132

Query: 385 FLIQRKLSQIGAYVS 429
           F + R++  IG   S
Sbjct: 133 FRLVREIEAIGGNTS 147


>At1g51980.1 68414.m05863 mitochondrial processing peptidase alpha
           subunit, putative similar to mitochondrial processing
           peptidase alpha subunit, mitochondrial precursor,
           Alpha-MPP (Ubiquinol-cytochrome C reductase subunit II)
           [Potato] SWISS-PROT:P29677
          Length = 503

 Score = 37.1 bits (82), Expect = 0.005
 Identities = 21/75 (28%), Positives = 36/75 (48%)
 Frame = +1

Query: 205 RIQSSVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKNISS 384
           ++Q + LPN   +A+    +P   + +    GS YE     G +H+L   A  +T N + 
Sbjct: 77  KLQITTLPNGLKIASETTPNPAASIGLYVDCGSIYEAPYFHGATHLLERMAFKSTLNRTH 136

Query: 385 FLIQRKLSQIGAYVS 429
           F + R++  IG   S
Sbjct: 137 FRLVREIEAIGGNTS 151


>At3g02090.2 68416.m00175 mitochondrial processing peptidase beta
           subunit, putative similar to mitochondrial processing
           peptidase beta subunit, mitochondrial precursor,
           Beta-MPP [Human] SWISS-PROT:O75439
          Length = 535

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = +1

Query: 217 SVLPNKTFVAALDNGSPVTR-VTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKNISSFLI 393
           + LPN   VA   N S  T  V +   AGSR+E     G +H L       T   +   +
Sbjct: 100 TTLPNGLRVATESNLSAKTATVGVWIDAGSRFESDETNGTAHFLEHMIFKGTDRRTVRAL 159

Query: 394 QRKLSQIGAYVS 429
           + ++  IG +++
Sbjct: 160 EEEIEDIGGHLN 171


>At3g02090.1 68416.m00174 mitochondrial processing peptidase beta
           subunit, putative similar to mitochondrial processing
           peptidase beta subunit, mitochondrial precursor,
           Beta-MPP [Human] SWISS-PROT:O75439
          Length = 531

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = +1

Query: 217 SVLPNKTFVAALDNGSPVTR-VTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKNISSFLI 393
           + LPN   VA   N S  T  V +   AGSR+E     G +H L       T   +   +
Sbjct: 100 TTLPNGLRVATESNLSAKTATVGVWIDAGSRFESDETNGTAHFLEHMIFKGTDRRTVRAL 159

Query: 394 QRKLSQIGAYVS 429
           + ++  IG +++
Sbjct: 160 EEEIEDIGGHLN 171


>At5g56730.1 68418.m07080 peptidase M16 family protein / insulinase
           family protein contains Pfam domain, PF05193: Peptidase
           M16 inactive domain
          Length = 956

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = +1

Query: 256 NGSPVTRVTIAF--KAGSRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGA 420
           N  P  R  +A   K GS  E + + G++H++   A   T   ++  I + L  IGA
Sbjct: 56  NSKPRMRAALALAVKVGSVLEEEDQRGVAHIVEHLAFSATTRYTNHDIVKFLESIGA 112


>At3g21580.2 68416.m02722 expressed protein
          Length = 384

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 312 FITRASFEGDCDTGNW 265
           FI RA+ +GD  TGNW
Sbjct: 60  FIVRATVDGDGKTGNW 75


>At5g03800.1 68418.m00347 exostosin family protein / pentatricopeptide
            (PPR) repeat-containing protein contains Pfam profiles:
            PF03016 exostosin family, PF01535 PPR repeat
          Length = 1388

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
 Frame = +1

Query: 139  PFIRHVTIRGYAQAAPAVK----KDVRIQSSVLPNKTFVAALDNGSPVTRVTIAFKAGSR 306
            P + H +IR    A  + +    KDV I    L   +    +   SP +R  +AF AG  
Sbjct: 1176 PHLGHNSIRALCNANTSERFKPRKDVSIPEINLRTGSLTGLVGGPSPSSRPILAFFAGGV 1235

Query: 307  YEPQAELGLSH 339
            + P   + L H
Sbjct: 1236 HGPVRPVLLQH 1246


>At1g69360.1 68414.m07960 expressed protein
          Length = 896

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 30  LNFS*GREDSVNHKPLLRYYLKFLKTYENGIQNSR 134
           LN +  +E+    KPL+  YLKF  T   GI ++R
Sbjct: 739 LNLTQTKEEDYMPKPLIPEYLKFDGTGSMGITSNR 773


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,475,148
Number of Sequences: 28952
Number of extensions: 158858
Number of successful extensions: 367
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 367
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 685039728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)