Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0152
         (712 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q567D6 Cluster: Rbm39b protein; n=3; Danio rerio|Rep: R...    37   0.56 
UniRef50_Q5QP22 Cluster: RNA binding motif protein 39; n=20; Coe...    34   3.0  
UniRef50_Q14498 Cluster: RNA-binding protein 39; n=55; Euteleost...    34   3.0  
UniRef50_UPI00003561EF Cluster: PREDICTED: hypothetical protein ...    33   6.9  
UniRef50_Q9MD35 Cluster: ORF76; n=1; Scenedesmus obliquus|Rep: O...    33   6.9  

>UniRef50_Q567D6 Cluster: Rbm39b protein; n=3; Danio rerio|Rep:
           Rbm39b protein - Danio rerio (Zebrafish) (Brachydanio
           rerio)
          Length = 164

 Score = 36.7 bits (81), Expect = 0.56
 Identities = 16/20 (80%), Positives = 17/20 (85%)
 Frame = +1

Query: 157 MAEDFDVEAMLEAPYNKSVS 216
           MA+DFDVEAMLEAPY K  S
Sbjct: 1   MADDFDVEAMLEAPYRKGES 20


>UniRef50_Q5QP22 Cluster: RNA binding motif protein 39; n=20;
           Coelomata|Rep: RNA binding motif protein 39 - Homo
           sapiens (Human)
          Length = 193

 Score = 34.3 bits (75), Expect = 3.0
 Identities = 14/22 (63%), Positives = 17/22 (77%)
 Frame = +1

Query: 157 MAEDFDVEAMLEAPYNKSVSNL 222
           MA+D D+EAMLEAPY K  + L
Sbjct: 1   MADDIDIEAMLEAPYKKDENKL 22


>UniRef50_Q14498 Cluster: RNA-binding protein 39; n=55;
           Euteleostomi|Rep: RNA-binding protein 39 - Homo sapiens
           (Human)
          Length = 530

 Score = 34.3 bits (75), Expect = 3.0
 Identities = 14/22 (63%), Positives = 17/22 (77%)
 Frame = +1

Query: 157 MAEDFDVEAMLEAPYNKSVSNL 222
           MA+D D+EAMLEAPY K  + L
Sbjct: 1   MADDIDIEAMLEAPYKKDENKL 22


>UniRef50_UPI00003561EF Cluster: PREDICTED: hypothetical protein
           XP_859886 isoform 4; n=1; Canis lupus familiaris|Rep:
           PREDICTED: hypothetical protein XP_859886 isoform 4 -
           Canis familiaris
          Length = 62

 Score = 33.1 bits (72), Expect = 6.9
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = +1

Query: 157 MAEDFDVEAMLEAPYNK 207
           MA+D D+EAMLEAPY K
Sbjct: 1   MADDIDIEAMLEAPYKK 17


>UniRef50_Q9MD35 Cluster: ORF76; n=1; Scenedesmus obliquus|Rep:
           ORF76 - Scenedesmus obliquus
          Length = 76

 Score = 33.1 bits (72), Expect = 6.9
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -2

Query: 579 YFII*NIKNSHF-SPIKNIYENN*LVCCKNYTTICFLSVFYN 457
           ++ +  IKN +F S IKN+Y N     CK+Y+   F  +FYN
Sbjct: 29  FYFLSFIKNFYFLSFIKNLYYNLLFKKCKDYSKDSFFCIFYN 70


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 571,804,814
Number of Sequences: 1657284
Number of extensions: 9767874
Number of successful extensions: 19412
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 18707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19407
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57024798702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)