Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0152
         (712 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97403-3|AAB52473.1|  142|Caenorhabditis elegans Hypothetical pr...    28   5.7  
AF068713-4|AAC17795.2|  398|Caenorhabditis elegans Hypothetical ...    28   5.7  

>U97403-3|AAB52473.1|  142|Caenorhabditis elegans Hypothetical
           protein T10E9.6 protein.
          Length = 142

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = -1

Query: 319 IVNYF*PLNK*LTIIYFLIVL*VQFFHFMNNVKDYSPIYYMELLTLPQHQNLPP 158
           I+ Y  P ++  T I F+      FF+  + + +Y P+YY+  L +     LPP
Sbjct: 73  ILTYLGPSDRPETGIMFIYWTIFGFFYLFDRILEYIPLYYIIKLAVFIGLFLPP 126


>AF068713-4|AAC17795.2|  398|Caenorhabditis elegans Hypothetical
           protein T24A6.8 protein.
          Length = 398

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -1

Query: 706 YHCVIQRCV*LEKFYVNIALCFGLINCKKTANCF 605
           YHC +  C   + F+  + L  G I C  + +C+
Sbjct: 44  YHCDVATCKGCKTFFRRMCLLRGEIKCSTSGDCY 77


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,918,487
Number of Sequences: 27780
Number of extensions: 259408
Number of successful extensions: 506
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)