Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0149
         (554 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces pom...    25   5.7  
SPBC29A3.16 |||ribosome biogenesis protein Rrs1 |Schizosaccharom...    25   7.5  
SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces ...    25   7.5  

>SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 220

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -1

Query: 92  LVNVLASEPTQRTTK-AKIINFCISIVSF 9
           L N L++   +  TK AK++NFCI I  F
Sbjct: 63  LFNSLSARTFRNLTKCAKVVNFCILISLF 91


>SPBC29A3.16 |||ribosome biogenesis protein Rrs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = -1

Query: 134 SSKPCFLSSCTRPH---LVNVLASEPTQRTTKAKIINFCISIVSFPR 3
           S K  FL S +R +   LVN + S P +RT+   ++    ++   PR
Sbjct: 34  SEKESFLFSLSRDNVQQLVNKMISLPKERTSDGVLLQLPETVTPLPR 80


>SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 539

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 360 VNFLSAFRCLSDVVSQEVGALNVA 289
           + FL++F C  DV    +GA+N A
Sbjct: 384 IKFLTSFDCQVDVAVDGIGAVNKA 407


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,081,231
Number of Sequences: 5004
Number of extensions: 38564
Number of successful extensions: 106
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)