Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0149
(554 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15782| Best HMM Match : DUF845 (HMM E-Value=5.8) 29 1.9
SB_59287| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_50648| Best HMM Match : Atrophin-1 (HMM E-Value=1.3) 29 3.4
SB_9094| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_2235| Best HMM Match : Arf (HMM E-Value=3.1e-13) 29 3.4
SB_22160| Best HMM Match : Arc (HMM E-Value=7.5) 28 4.5
SB_23840| Best HMM Match : Casein (HMM E-Value=2.8) 28 5.9
SB_46261| Best HMM Match : Integrase_Zn (HMM E-Value=5.9) 27 7.8
SB_20525| Best HMM Match : E1-E2_ATPase (HMM E-Value=0) 27 7.8
SB_27810| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.8
>SB_15782| Best HMM Match : DUF845 (HMM E-Value=5.8)
Length = 283
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 124 GFEENLMRNWVCLVEHESSRDTSKTN 201
GFEE + R W+ + E S D +KTN
Sbjct: 33 GFEEEVKRQWIGCDKLEGSNDITKTN 58
>SB_59287| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 174
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -3
Query: 435 AAANIRQRALAVVLPTVPGIEAVTFVNFLSAFRCLSDV-VSQEVGALN 295
A N+++RAL + P + + ++ V+ LS LSDV V +V L+
Sbjct: 90 ALENVQRRALKIAFPVLSDVSVLSDVSVLSDVSVLSDVSVLSDVSVLS 137
>SB_50648| Best HMM Match : Atrophin-1 (HMM E-Value=1.3)
Length = 1281
Score = 28.7 bits (61), Expect = 3.4
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Frame = -3
Query: 414 RALAVVLPTVPGIEAVTFVNFLSAFRCLSDVVSQEVGALNV---AVFAWTGAFAAPVPVV 244
RAL V+ + G +A+T NF+S C + LN+ AV TG A PV V
Sbjct: 285 RALMVLHSRITGEDALTLTNFISFKACCHAHSGDDEVILNLHFGAVTMETGILAIPVTPV 344
Query: 243 DL 238
+
Sbjct: 345 PI 346
>SB_9094| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 510
Score = 28.7 bits (61), Expect = 3.4
Identities = 22/78 (28%), Positives = 35/78 (44%)
Frame = +1
Query: 121 HGFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDYGLFQINDRYWCSKGASPGKDCNVK 300
H + +++W+ + E RDT+ N + ++N+ W K K +VK
Sbjct: 53 HEADPVAVKSWLKKLSEEQFRDTADKYLRPNNCSHVVVPKVNEEIW-GKLTRQVKTKDVK 111
Query: 301 CSDLLTDDITKAAKCAKK 354
S L T +ITKA A K
Sbjct: 112 FSRLQT-NITKAGHIAVK 128
>SB_2235| Best HMM Match : Arf (HMM E-Value=3.1e-13)
Length = 334
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 117 ETWLRRKSHEELGMSGRAREQP*HIQDEHEP 209
E WL RK H E +S RE+ ++++H+P
Sbjct: 223 EAWLERKEHREDSLSEHEREE---VKNKHKP 250
>SB_22160| Best HMM Match : Arc (HMM E-Value=7.5)
Length = 246
Score = 28.3 bits (60), Expect = 4.5
Identities = 19/71 (26%), Positives = 30/71 (42%)
Frame = +1
Query: 52 VVLCVGSEAKTFTRCGLVHELRKHGFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDYG 231
VV G + + + + L++ GF +L + V + +S K RNG K
Sbjct: 41 VVKVTGGRSNSSSHEDVAQSLKRSGFLYDLTESSV--IPTATSATYRKFRLKRNGMKKTE 98
Query: 232 LFQINDRYWCS 264
F+ R WCS
Sbjct: 99 FFKYLRRKWCS 109
>SB_23840| Best HMM Match : Casein (HMM E-Value=2.8)
Length = 501
Score = 27.9 bits (59), Expect = 5.9
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +1
Query: 163 VEHESSRDTSKTNTNRNGSKDYGLFQINDRYWCSKGASPGKDCNVKCSDLLTDDI 327
V H+ S++ S+TN RNG + + K + +DC V DL T ++
Sbjct: 342 VTHKPSKERSRTNRARNGHAQTERETVTHKP-SEKRSRTNRDCGVGRDDLTTIEL 395
>SB_46261| Best HMM Match : Integrase_Zn (HMM E-Value=5.9)
Length = 168
Score = 27.5 bits (58), Expect = 7.8
Identities = 8/32 (25%), Positives = 19/32 (59%)
Frame = +1
Query: 208 RNGSKDYGLFQINDRYWCSKGASPGKDCNVKC 303
R+ ++ + + +R+W +G + K+C +KC
Sbjct: 46 RHVGVEHVINHLRERFWILRGRTEVKECTIKC 77
>SB_20525| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)
Length = 1145
Score = 27.5 bits (58), Expect = 7.8
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = -1
Query: 191 DVSRLLSCSTRHTQFLMRFSSK-PCFL--SSCTRPHLVNVLASEPTQRTTKAKIINFCIS 21
D + C++ Q L+ K PC SC + + +V A E Q TT AK ++ C S
Sbjct: 98 DQRKAKCCNSGEHQSLISEDEKLPCLSVKKSCFKEGIASVPAKETDQVTTTAKDVSDCCS 157
>SB_27810| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 106 HELRKHGFEENLMRNWVCLVEHESSRDTSKTNTNRNGSK 222
H RKH F N+ R+ + HE+ ++ K + R +K
Sbjct: 61 HRRRKHIFRHNVRRSGISGESHENRKNKKKEHKKRMHAK 99
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,990,191
Number of Sequences: 59808
Number of extensions: 315708
Number of successful extensions: 705
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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