Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0149
         (554 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g33985.1 68417.m04822 expressed protein                             29   2.8  
At5g25960.1 68418.m03088 hypothetical protein various predicted ...    27   6.4  
At4g28550.1 68417.m04084 RabGAP/TBC domain-containing protein si...    27   6.4  
At2g22410.1 68415.m02657 pentatricopeptide (PPR) repeat-containi...    27   6.4  

>At4g33985.1 68417.m04822 expressed protein
          Length = 154

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 87  HEMRSRA*AEETWLRRKSHEELGMSGRAR 173
           H     A  EE WLR+K  + LG  GR++
Sbjct: 19  HSWSPDADREEAWLRKKGKQSLGRLGRSK 47


>At5g25960.1 68418.m03088 hypothetical protein various predicted
           proteins, Arabidopsis thaliana contains Pfam profile
           PF03080: Arabidopsis proteins of unknown function
          Length = 352

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 15/55 (27%), Positives = 23/55 (41%)
 Frame = +1

Query: 115 RKHGFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDYGLFQINDRYWCSKGASP 279
           ++H F+   +RN    ++      T KT    NGS +    QI  + W   G  P
Sbjct: 55  KQHAFDHPALRNHKIQMKPSVDFGTKKTTIPNNGSSE----QITSQIWSKSGNCP 105


>At4g28550.1 68417.m04084 RabGAP/TBC domain-containing protein
           similar to SP|P09379 GTPase-activating protein GYP7
           (Fragment) {Yarrowia lipolytica}; contains Pfam profile
           PF00566: TBC domain
          Length = 424

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +1

Query: 361 KRHRFDAWYGWKNHCQGSLPDISS 432
           + HR + +Y WK  C+  +P + S
Sbjct: 100 RNHRREQYYAWKEECKNMVPLVGS 123


>At2g22410.1 68415.m02657 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 681

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +1

Query: 4   RGKDTIEMQKLIIFALVVLCVGSEAKTFTRCGLVHELRK--HGFEENLMRNWVCLV 165
           RGK+  E  K     + +  V +    F++CG +HE R+     E+  + +W  ++
Sbjct: 275 RGKEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMI 330


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,121,394
Number of Sequences: 28952
Number of extensions: 212347
Number of successful extensions: 611
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)