Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0147
         (675 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    29   0.81 
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    27   2.5  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.5  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.3  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    27   3.3  
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce...    26   4.3  
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   5.7  
SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr...    25   10.0 

>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = -3

Query: 328 LSLPAPLSPSCTISTAPRFASDTS--VDTRSTPPPP 227
           ++ P    PS   ST P F   TS    + STPPPP
Sbjct: 208 VNTPLNQPPSYAASTQPEFQQTTSPIFSSSSTPPPP 243


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 24/86 (27%), Positives = 38/86 (44%)
 Frame = -1

Query: 471 VSIAPFPIRSFDLGHSFLSSD*RAALYASPYAVDFLSMDLAVVVVR*GFHSPHHSRLLAP 292
           + I+  P R  +L  +F+ S   +    S  AV+ L +  +   +     SPHH  + +P
Sbjct: 25  IKISDSPNRHHNLVDAFMQSPSYSTQPKS--AVEPLGLSFSPGYISPSSQSPHHGPVRSP 82

Query: 291 YPRRPGLLPTPAWTPGPRRRHHLERP 214
             R+P  LP    +P   R H L  P
Sbjct: 83  SSRKP--LPA---SPSRTRDHSLRVP 103


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 20/57 (35%), Positives = 24/57 (42%)
 Frame = -3

Query: 373 GLSKHGFGSRRGAMRLSLPAPLSPSCTISTAPRFASDTSVDTRSTPPPPLRASTDST 203
           G S     S   +   S   P + + T    P     TS  + STPPPP  AST ST
Sbjct: 326 GTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPT-VPPTSTSSTSTPPPP--ASTSST 379



 Score = 26.2 bits (55), Expect = 4.3
 Identities = 13/20 (65%), Positives = 14/20 (70%)
 Frame = -3

Query: 262 TSVDTRSTPPPPLRASTDST 203
           TS  + STPPPP  AST ST
Sbjct: 308 TSTSSTSTPPPP--ASTSST 325


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -3

Query: 331  RLSLPAPLSPSCTISTAPRFASDTSVDTRSTPPPPLRAST 212
            ++S P P  P  ++   P  A        S PPPPL AS+
Sbjct: 1701 QMSAPTPPPPPMSVPPPPS-APPMPAGPPSAPPPPLPASS 1739


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = +3

Query: 438  QKSELEKALSKHKEKQILNQMREQQ 512
            +K++ +K L+  K+K+I+ Q R+QQ
Sbjct: 1275 EKTQEKKRLALEKQKKIMQQFRDQQ 1299


>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +3

Query: 441 KSELEKALSKHKEKQILNQMREQQHKD 521
           ++E+E+ LS   EK +L+ MR+  H++
Sbjct: 152 QNEVEQTLSPKDEKDLLDPMRDYIHRE 178


>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 475

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +1

Query: 265 RKQTWAPWIWCKKARV 312
           RK+TW+PWI   ++R+
Sbjct: 405 RKETWSPWILPSESRL 420


>SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting
           protein homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 455

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +3

Query: 354 NPCLESPQRMDLHRELLFNQRIGKNVLNQKSELEKALSKHKEKQILN 494
           NP +   Q+++L +EL       K   NQK + +   SK+  +++ N
Sbjct: 232 NPVISKAQQLELIQELKHEGSRLKQAANQKRKSKTVSSKNNFQRLQN 278


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,695,221
Number of Sequences: 5004
Number of extensions: 52943
Number of successful extensions: 182
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)