Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0147
         (675 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g64530.1 68418.m08110 no apical meristem (NAM) family protein...    33   0.17 
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    30   1.6  
At3g05470.1 68416.m00599 formin homology 2 domain-containing pro...    29   3.8  
At3g05340.1 68416.m00582 pentatricopeptide (PPR) repeat-containi...    28   5.0  
At3g53830.1 68416.m05947 regulator of chromosome condensation (R...    28   6.6  
At4g28750.1 68417.m04111 photosystem I reaction center subunit I...    27   8.7  
At3g09760.1 68416.m01156 zinc finger (C3HC4-type RING finger) fa...    27   8.7  
At1g31750.1 68414.m03895 proline-rich family protein contains pr...    27   8.7  

>At5g64530.1 68418.m08110 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
           similar to NAM (no apical meristem)
          Length = 187

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 12/28 (42%), Positives = 21/28 (75%)
 Frame = +2

Query: 542 PDRASSATRTSRADYRRSRAGHKPDFAR 625
           PD +SS++R+S+   R S + HKPD+++
Sbjct: 119 PDSSSSSSRSSKRSSRASSSSHKPDYSK 146


>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -1

Query: 318 PHHSRLLAPYPRRPGLLPTPAWTPGPRRRHHLERP 214
           P   RL +P PRR GL P+P    G    +HLE P
Sbjct: 474 PPAQRLPSPPPRRAGL-PSPMRIGGSHAANHLESP 507


>At3g05470.1 68416.m00599 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 884

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -1

Query: 318 PHHSRLLAPYPRRPGLLPTPAWTPGPRRRHHLERPQIAR 202
           P  S    P P RP  +P     P P+R H LE+P+I R
Sbjct: 110 PIESPAYPPAPPRP--IPPHLRRPLPQRTHPLEQPEIQR 146


>At3g05340.1 68416.m00582 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 658

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 206 AICGRSKWWRRRGPGVHAGVGSKP 277
           +ICGR  W+   GP +HA +   P
Sbjct: 52  SICGREGWFPHLGPCLHASIIKNP 75


>At3g53830.1 68416.m05947 regulator of chromosome condensation
           (RCC1) family protein / UVB-resistance protein-related
           contains Pfam PF00415 : Regulator of chromosome
           condensation (RCC1); similar to UVB-resistance protein
           UVR8 (GIi;10177674) [Arabidopsis thaliana]
          Length = 487

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 20/80 (25%), Positives = 29/80 (36%), Gaps = 3/80 (3%)
 Frame = +2

Query: 422 KECPKSKERIGKGAIETQREADIESNAGTATQGCARIRTRPDRASSATRTSRADYRRSRA 601
           KEC  SK+ +GK    +  + DI S    A  G             + +  R    +   
Sbjct: 132 KECIPSKDPVGKQQSGSSEQGDIASQGSNAASGTTLQNENQKVGEESVKRRRVSTAKDET 191

Query: 602 -GHKP--DFARDTSALETCG 652
            GH    DF   T +L + G
Sbjct: 192 EGHTSGGDFFATTPSLVSVG 211


>At4g28750.1 68417.m04111 photosystem I reaction center subunit IV,
           chloroplast, putative / PSI-E, putative (PSAE1)
           identical to SP|Q9S831; similar to SP|P12354 Photosystem
           I reaction center subunit IV, chloroplast precursor
           (PSI-E) {Spinacia oleracea}; contains Pfam profile
           PF02427: Photosystem I reaction centre subunit IV / PsaE
          Length = 143

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 19/48 (39%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
 Frame = -3

Query: 352 GSRRGAMRLSLPAPLSPSCTISTAPRFASDTSVDTRSTPPP--PLRAS 215
           GSR        PAP S S   S A   A D +  T+  PPP  P R S
Sbjct: 38  GSRLVVRAAEDPAPASSSSKDSPAAAAAPDGATATKPKPPPIGPKRGS 85


>At3g09760.1 68416.m01156 zinc finger (C3HC4-type RING finger)
           family protein  ; contains Pfam profile PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 491

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -3

Query: 325 SLPA-PLSPSCTISTAPRFASDTSVDTRSTPPPPLRAS 215
           SLP  P++ S   ST  RFA D    T+  PP P+  S
Sbjct: 176 SLPVTPIAHSNPESTHGRFAVDLVTSTKKGPPLPIHRS 213


>At1g31750.1 68414.m03895 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 176

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = -1

Query: 330 GFHSPHHSRLLAPYPRRPGLLPTPAWTPGP 241
           G+  P H    A YP  PG  P PA  PGP
Sbjct: 47  GYPPPPHGYPPAAYPPPPGAYP-PAGYPGP 75


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,703,052
Number of Sequences: 28952
Number of extensions: 303943
Number of successful extensions: 1161
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1158
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)