Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0146
(456 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac... 77 1e-15
SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc... 54 8e-09
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 27 1.8
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce... 26 2.4
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po... 26 3.1
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc... 26 3.1
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha... 25 4.2
SPBC3H7.15 |hhp1||serine/threonine protein kinase Hhp1|Schizosac... 25 5.5
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom... 25 5.5
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual 25 7.3
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 24 9.6
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc... 24 9.6
SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein Sad1|S... 24 9.6
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 24 9.6
>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 446
Score = 77.4 bits (182), Expect = 1e-15
Identities = 33/96 (34%), Positives = 59/96 (61%)
Frame = +2
Query: 167 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHIKR 346
MI GLF++N KG+ LI + +R D+ ++ + FRV ++ R P+ +I +++ + K
Sbjct: 1 MISGLFIFNLKGDTLICKTFRHDLKKSVTEIFRVAIL-TNTDYRHPIVSIGSSTYIYTKH 59
Query: 347 ANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKI 454
++++ A+TK N N +V EFL +I + YFGK+
Sbjct: 60 EDLYVVAITKGNPNVMIVLEFLESLIQDLTHYFGKL 95
>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 54.4 bits (125), Expect = 8e-09
Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 2/98 (2%)
Frame = +2
Query: 167 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAF--RVNVIHARQQVRSPVTNIARTSFFHI 340
M +FV N KG+V+ISR YR DI + V+ F + + Q +P ++ +I
Sbjct: 1 MASAIFVLNLKGKVIISRDYRADIPMSVVEKFLPLKSEVEEEQGFSTPCLTHEGINYIYI 60
Query: 341 KRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKI 454
+++L A++K N +A + FL K+ DV YF ++
Sbjct: 61 HHNDVYLLALSKMNSDAMEMLVFLRKMADVFIDYFKEL 98
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 26.6 bits (56), Expect = 1.8
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 109 SLNSNYIETNFERV*GLTYNDRRLVRLQP 195
S + N +E+N E+V GL ND ++ L+P
Sbjct: 77 SSSLNTMESNIEKVNGLFPNDNSVIALKP 105
>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 715
Score = 26.2 bits (55), Expect = 2.4
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = -3
Query: 373 CDCCQPNICTLDMEERCACNVGNR 302
C C +C L +E C C++ N+
Sbjct: 675 CSCKSITVCPLHIEYLCKCDLSNK 698
>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 320
Score = 25.8 bits (54), Expect = 3.1
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 291 RCDHLLPTLHAHLSSISSVQIFGWQQSQSKM*TR 392
RC + +L H+S + SV + W Q++ TR
Sbjct: 51 RCSGVHRSLGVHVSRVKSVDLDSWTDEQTENMTR 84
>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 878
Score = 25.8 bits (54), Expect = 3.1
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +2
Query: 83 YVKFLKGCNR*IAITLKPILKECEASPTMIGGLFVYNHKGEVLISRVYRDDIGRNAVD 256
+V ++ G R I + L P+L PT+ +NH G++ + R + G N+ D
Sbjct: 737 HVSYVTGVIRSIDLQL-PVLLSKFMKPTIFDSYDFFNHWGQMGVEREAQLTFGLNSKD 793
>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 720
Score = 25.4 bits (53), Expect = 4.2
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 294 CDHLLPTLHAHLSSISSVQIF 356
CD L+ LHA L SSV +F
Sbjct: 118 CDRLVRQLHASLEDASSVGLF 138
>SPBC3H7.15 |hhp1||serine/threonine protein kinase
Hhp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 365
Score = 25.0 bits (52), Expect = 5.5
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 313 HCTHIFLPYQACKYLAGSSHKAKCERGHGI 402
H TH+ +PY+ K L G++ A GI
Sbjct: 161 HKTHLHIPYRENKNLTGTARYASINTHLGI 190
>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1188
Score = 25.0 bits (52), Expect = 5.5
Identities = 12/51 (23%), Positives = 26/51 (50%)
Frame = +2
Query: 257 AFRVNVIHARQQVRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEF 409
+ RVN+ + +S +N + T+ +H++ + + +A+VFEF
Sbjct: 839 SIRVNIAGVKITAKSSTSNSSSTAEYHVRSRHAVIP--VNNRYRSAVVFEF 887
>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
Length = 653
Score = 24.6 bits (51), Expect = 7.3
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +3
Query: 279 MLASRCDHL-LPTLHAHLSSISSVQIFGWQ 365
M+A D L + T+H HL ++S +++ WQ
Sbjct: 423 MIALISDFLSVMTIHIHLLYLASSRLYNWQ 452
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 24.2 bits (50), Expect = 9.6
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +2
Query: 203 EVLISRVYRDDIGRNAVDAFRVN 271
E LI VY D RN D R+N
Sbjct: 509 EFLIEGVYEDSNSRNKRDLLRIN 531
>SPAC12B10.03 |||WD repeat protein, human WDR20
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 24.2 bits (50), Expect = 9.6
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -2
Query: 242 DQYHLGRLSRSTPRLYG 192
D++ LG SRSTP++ G
Sbjct: 26 DEFQLGSSSRSTPQITG 42
>SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein
Sad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 24.2 bits (50), Expect = 9.6
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +2
Query: 125 TLKP-ILKECEASPTMIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRS 301
+LKP I+K+ SP+ +GG +++ LI++ D I + V+ + ++ +S
Sbjct: 224 SLKPDIIKDFTDSPSKVGGNEEFDYSTGDLITKKEFDKILQQKVEQLKQSLKEEMSNYKS 283
Query: 302 PV 307
V
Sbjct: 284 SV 285
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 24.2 bits (50), Expect = 9.6
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -1
Query: 408 NSNTMAAFTFCFVTAASQIFAR-LIWKKDVRAMLVTGDRTCWR 283
++ T FT ++ +S + A + W D +L T + TCW+
Sbjct: 449 STRTSFKFTPLWIFESSDLAALDIAWTADNSLILCTRNGTCWK 491
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,976,532
Number of Sequences: 5004
Number of extensions: 39291
Number of successful extensions: 103
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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