Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0146
(456 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0373 + 28374298-28374380,28375126-28375303,28375975-283760... 85 3e-17
05_06_0262 - 26746180-26746278,26746371-26746493,26746584-267467... 58 3e-09
01_06_0412 + 29159918-29160046,29160148-29160297,29160385-291604... 56 1e-08
07_03_1297 + 25587445-25587502,25587646-25587740,25588426-255886... 48 4e-06
02_05_0128 - 26059348-26059437,26059553-26059759 31 0.33
06_01_1145 - 9575173-9575553,9575712-9575858,9575971-9576024,957... 27 7.2
01_06_0886 + 32725504-32725824,32725905-32726658,32727911-327280... 27 7.2
01_06_0685 - 31218716-31218873,31218974-31219266,31219366-312195... 27 7.2
05_05_0225 - 23437454-23437793,23438348-23440573,23440771-23441603 27 9.5
>02_05_0373 +
28374298-28374380,28375126-28375303,28375975-28376065,
28376162-28376256,28376379-28376468,28376789-28376837,
28376941-28377079,28377224-28377340,28377437-28377527,
28377604-28377746,28378009-28378123,28378439-28378483,
28378565-28378645
Length = 438
Score = 84.6 bits (200), Expect = 3e-17
Identities = 34/96 (35%), Positives = 61/96 (63%)
Frame = +2
Query: 161 PTMIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHI 340
P ++ N +G+VLI+R+YRDD+G N VDAFR++++ ++ PV I SF ++
Sbjct: 2 PVAASAIYFLNLRGDVLINRLYRDDVGGNMVDAFRMHIMQTKELGTCPVRQIGGCSFLYM 61
Query: 341 KRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFG 448
+ +N+++ V N N A F+F+++ + + +SYFG
Sbjct: 62 RISNVYIVIVVSSNANVACAFKFVVEAVALFKSYFG 97
>05_06_0262 -
26746180-26746278,26746371-26746493,26746584-26746725,
26746824-26746921,26747012-26747108,26747215-26747322,
26747900-26748003,26748170-26748268,26748373-26748435,
26748538-26748687,26748769-26748900
Length = 404
Score = 58.0 bits (134), Expect = 3e-09
Identities = 31/98 (31%), Positives = 54/98 (55%), Gaps = 3/98 (3%)
Frame = +2
Query: 170 IGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQ--QVRSPVTNI-ARTSFFHI 340
+ LF+ + KG VL+ R YR D+ + F ++ +V SPV + A S+ I
Sbjct: 6 VSALFLLDIKGRVLVWRDYRGDVSALQAERFFTKLLDKESDAEVLSPVVHDDAGVSYMFI 65
Query: 341 KRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKI 454
+ N++L ++QN NAA + FL +++DV + YF ++
Sbjct: 66 QHNNVFLLTASRQNCNAASILLFLHRVVDVFKHYFEEL 103
>01_06_0412 +
29159918-29160046,29160148-29160297,29160385-29160447,
29160540-29160716,29160796-29160899,29162142-29162249,
29162336-29162432,29162540-29162637,29162718-29162859,
29162941-29163063,29163161-29163259
Length = 429
Score = 56.0 bits (129), Expect = 1e-08
Identities = 29/98 (29%), Positives = 53/98 (54%), Gaps = 3/98 (3%)
Frame = +2
Query: 170 IGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHAR--QQVRSPVT-NIARTSFFHI 340
+ LF+ + KG VL+ R YR D+ + F ++ + SPV + A ++ I
Sbjct: 5 VSALFLLDIKGRVLVWRDYRGDVSALQAERFFTKLLDKEGDSEAHSPVVYDDAGVTYMFI 64
Query: 341 KRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKI 454
+ N++L ++QN NAA + FL +++DV + YF ++
Sbjct: 65 QHNNVFLLTASRQNCNAASILLFLHRVVDVFKHYFEEL 102
>07_03_1297 +
25587445-25587502,25587646-25587740,25588426-25588629,
25588843-25588959,25589084-25589212,25589591-25589717,
25590174-25590277,25590369-25590473,25590969-25591190,
25591869-25591967
Length = 419
Score = 48.0 bits (109), Expect = 4e-06
Identities = 25/97 (25%), Positives = 51/97 (52%), Gaps = 3/97 (3%)
Frame = +2
Query: 167 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAF--RVNVIHARQQVRSP-VTNIARTSFFH 337
MI FV + +G+ ++ R YR ++ + + + F +V + + +P V N+ ++ H
Sbjct: 1 MISQFFVLSQRGDHIVFRDYRGEVPKGSAEIFFRKVKFWNDDEAEEAPPVFNVDGVNYIH 60
Query: 338 IKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFG 448
+K A ++ T NV+ +++ E L +I V + Y G
Sbjct: 61 VKVAGLFFVVTTMVNVSPSLLLELLQRIARVTKDYLG 97
>02_05_0128 - 26059348-26059437,26059553-26059759
Length = 98
Score = 31.5 bits (68), Expect = 0.33
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = +2
Query: 143 KECEASPTMIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIAR 322
KE E +GGL + E I DD+G++ V++FR V + VR+ + N+ +
Sbjct: 27 KELEWRKAQLGGLIRMITEEEDAIFDALHDDLGKHRVESFRDEVGVLAKSVRNTLQNLKK 86
>06_01_1145 -
9575173-9575553,9575712-9575858,9575971-9576024,
9576692-9576862,9577004-9577231,9577392-9577478,
9577600-9577761
Length = 409
Score = 27.1 bits (57), Expect = 7.2
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Frame = -2
Query: 338 YGRKMCVQCW*QVIAPAGEHGSHSL*MRPQHYDQYHLGRLS---RSTPRLYGCKRTSL 174
YG K+ + W IA +G+ L + YD L + + P +YG +T L
Sbjct: 172 YGTKVTINVWQPTIATSGDFSLSQLWISAGSYDNKDLNTIETGWQVYPAMYGDDKTRL 229
>01_06_0886 +
32725504-32725824,32725905-32726658,32727911-32728033,
32729477-32729535,32731427-32731732,32732006-32732236,
32732332-32732484,32732567-32732836
Length = 738
Score = 27.1 bits (57), Expect = 7.2
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = -3
Query: 406 LKYHGRVHILLCDCCQPNICTLDMEERCACNVGNR*SHLLASMDHIHSEC 257
L+ HG V + L + PN+ TLD+ + +G SM H + C
Sbjct: 526 LRVHGCVRLKLIESKVPNLSTLDLSGKAELLLGETLQMKNLSMRHPNVVC 575
>01_06_0685 -
31218716-31218873,31218974-31219266,31219366-31219559,
31219666-31220409,31221504-31221824
Length = 569
Score = 27.1 bits (57), Expect = 7.2
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -3
Query: 442 IRLHHINDLQQELKYHGRVHILLCDCCQPNICTLDMEE 329
+ H IN +E GRV ++ DCC+ N T +++
Sbjct: 365 VTFHFIN-AYEETDEEGRVTAIIADCCEHNANTAILDK 401
>05_05_0225 - 23437454-23437793,23438348-23440573,23440771-23441603
Length = 1132
Score = 26.6 bits (56), Expect = 9.5
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +3
Query: 312 TLHAHLSSISSVQIFGWQQSQS 377
TLH H ++ +SV ++GW S
Sbjct: 745 TLHIHSATSTSVSVYGWSSVSS 766
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,943,736
Number of Sequences: 37544
Number of extensions: 262740
Number of successful extensions: 520
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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