Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0146
         (456 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24749| Best HMM Match : Adap_comp_sub (HMM E-Value=2.24208e-44)    177   3e-45
SB_48498| Best HMM Match : DUF369 (HMM E-Value=2.4)                    30   1.0  
SB_19443| Best HMM Match : Adap_comp_sub (HMM E-Value=2.2e-20)         30   1.0  
SB_41497| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.4  
SB_26838| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.4  
SB_54795| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_53688| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.6  
SB_17727| Best HMM Match : Exo_endo_phos (HMM E-Value=2.4e-12)         27   5.6  
SB_4666| Best HMM Match : Exo_endo_phos (HMM E-Value=2.5)              27   5.6  
SB_42923| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.6  
SB_23474| Best HMM Match : Exo_endo_phos (HMM E-Value=2.4e-12)         27   5.6  
SB_13020| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.6  
SB_31109| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.073)            27   7.4  
SB_18996| Best HMM Match : zf-C4_Topoisom (HMM E-Value=3.5)            27   7.4  
SB_44359| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_27157| Best HMM Match : CLPTM1 (HMM E-Value=0)                      27   9.7  
SB_9053| Best HMM Match : TIG (HMM E-Value=0)                          27   9.7  

>SB_24749| Best HMM Match : Adap_comp_sub (HMM E-Value=2.24208e-44)
          Length = 331

 Score =  177 bits (432), Expect = 3e-45
 Identities = 78/96 (81%), Positives = 89/96 (92%)
 Frame = +2

Query: 167 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHIKR 346
           MIGG F+YNHKGEVLISRVYRDDIGRN VDAFRVNVIHAR Q+RSPVTNIARTSFFHI++
Sbjct: 1   MIGGFFIYNHKGEVLISRVYRDDIGRNTVDAFRVNVIHARGQIRSPVTNIARTSFFHIRQ 60

Query: 347 ANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKI 454
            N+W+AAVT+QNVNAAMVFEFL + +D+M SYFGK+
Sbjct: 61  GNVWIAAVTRQNVNAAMVFEFLFRTVDIMMSYFGKV 96


>SB_48498| Best HMM Match : DUF369 (HMM E-Value=2.4)
          Length = 734

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 18/68 (26%), Positives = 33/68 (48%)
 Frame = +2

Query: 161 PTMIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHI 340
           PT +G +   ++ G  +I+R+ +   G     +    VI   Q+++  VTN   +  FH 
Sbjct: 225 PTHVGQVIHSSYGGSAIIARLKKSVHGSRFEGSVIAEVIEPFQELQDDVTNHPLSVSFHG 284

Query: 341 KRANIWLA 364
           + A + LA
Sbjct: 285 ENATLKLA 292


>SB_19443| Best HMM Match : Adap_comp_sub (HMM E-Value=2.2e-20)
          Length = 216

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 359 LAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKI 454
           +   TK+N N A++F FL +++ V   YF ++
Sbjct: 12  VVCTTKKNANVALIFVFLHRMVHVFIDYFKEL 43


>SB_41497| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 792

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = -3

Query: 451 LAKIRLHHINDLQQEL-KYHGRVHILLCDCCQ 359
           +A+I+ + I D Q++  KY G  H+L+ DCC+
Sbjct: 732 IARIKRYAIQDRQKDRPKYTGFHHMLMYDCCR 763


>SB_26838| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 325

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = -3

Query: 451 LAKIRLHHINDLQQEL-KYHGRVHILLCDCCQ 359
           +A+I+ + I D Q++  KY G  H+L+ DCC+
Sbjct: 280 IARIKRYAIQDRQKDRPKYTGFHHMLMYDCCR 311


>SB_54795| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1220

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = +1

Query: 247 CCGRIQSECDPCSPAGAITCYQHCTHIFLPYQACKYLAG-SSH 372
           CC R+  +   C   G I  YQ   H  LP+    YLAG  SH
Sbjct: 262 CCSRLNVQRYGCYTTGHINDYQQIFHYALPHGT--YLAGVESH 302


>SB_53688| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 491

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = -3

Query: 298 SHLLASMDHIHSEC-VHSITTNIISVDSRDQHLAFMVVNEQASDHC 164
           SH    +DHI++ C +  +T  I++VD  D    F          C
Sbjct: 97  SHTATLIDHIYTNCPISHVTPGILTVDISDHLPIFCTFKSHLKKTC 142


>SB_17727| Best HMM Match : Exo_endo_phos (HMM E-Value=2.4e-12)
          Length = 648

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = -3

Query: 298 SHLLASMDHIHSEC-VHSITTNIISVDSRDQHLAFMVVNEQASDHC 164
           SH    +DHI++ C +  +T  I++VD  D    F          C
Sbjct: 268 SHTATLIDHIYTNCPISHVTPGILTVDISDHLPIFCTFKSHLKKTC 313


>SB_4666| Best HMM Match : Exo_endo_phos (HMM E-Value=2.5)
          Length = 209

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = -3

Query: 298 SHLLASMDHIHSEC-VHSITTNIISVDSRDQHLAFMVVNEQASDHC 164
           SH    +DHI++ C +  +T  I++VD  D    F          C
Sbjct: 97  SHTATLIDHIYTNCPISHVTPGILTVDISDHLPIFCTFKSHLKKTC 142


>SB_42923| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 240

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = -3

Query: 298 SHLLASMDHIHSEC-VHSITTNIISVDSRDQHLAFMVVNEQASDHC 164
           SH    +DHI++ C +  +T  I++VD  D    F          C
Sbjct: 97  SHTATLIDHIYTNCPISHVTPGILTVDISDHLPIFCTFKSHLKKTC 142


>SB_23474| Best HMM Match : Exo_endo_phos (HMM E-Value=2.4e-12)
          Length = 623

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = -3

Query: 298 SHLLASMDHIHSEC-VHSITTNIISVDSRDQHLAFMVVNEQASDHC 164
           SH    +DHI++ C +  +T  I++VD  D    F          C
Sbjct: 470 SHTATLIDHIYTNCPISHVTPGILTVDISDHLPIFCTFKSHLKKTC 515


>SB_13020| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 722

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = -3

Query: 298 SHLLASMDHIHSEC-VHSITTNIISVDSRDQHLAFMVVNEQASDHC 164
           SH    +DHI++ C +  +T  I++VD  D    F          C
Sbjct: 84  SHTATLIDHIYTNCPISHVTPGILTVDISDHLPIFCTFKSHLKKTC 129


>SB_31109| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.073)
          Length = 582

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = -1

Query: 384 TFCFVTAASQIFARLIWK---KDVRAMLVTGDR 295
           T C ++ A  +F  L WK   + VR +LVTG +
Sbjct: 523 TLCIISIAPFVFIVLFWKFVPESVRWLLVTGSK 555


>SB_18996| Best HMM Match : zf-C4_Topoisom (HMM E-Value=3.5)
          Length = 475

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 8/124 (6%)
 Frame = -3

Query: 451 LAKIRLHHINDLQQ-ELKYHGRVHILLCDCCQPNICTLDMEERCACNVGNR*SHLLASMD 275
           +A+I+ + I+D Q+   KY G  H+L  D     I   D E++C    G +   LL    
Sbjct: 347 IARIKRYAIDDRQKGRTKYTGPHHVLTVDHVLGMIA--DAEKKCTV-CGTQ--LLLQGYT 401

Query: 274 HIHSECVHSITTNIISVDSRDQHL-------AFMVVNEQASDHCR*GLTLFQNWFQCNCY 116
             H +C      +I  +D    H        A   +   ++DH R  L    ++F   C+
Sbjct: 402 KSHPQCF-----SIDRLDDSQGHYKWNVRLRALAAIKGTSADHARVTLARSADFFDLFCH 456

Query: 115 SAIT 104
           +++T
Sbjct: 457 ASVT 460


>SB_44359| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 283

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 162 GEASHSFKIGFNVIAIQRLHPFRN 91
           G+  H+F+   N    Q LHPFR+
Sbjct: 27  GQELHTFRDAHNTFQEQELHPFRD 50


>SB_27157| Best HMM Match : CLPTM1 (HMM E-Value=0)
          Length = 1264

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 309 PTLHAHLSSISSVQIFGWQQSQSKM*TRPWY 401
           PTL  HL+  S + +F WQ  +S+   + W+
Sbjct: 304 PTLDLHLT-YSPISLFKWQMYESQRMRQKWF 333


>SB_9053| Best HMM Match : TIG (HMM E-Value=0)
          Length = 2990

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 256  RIQSECDPCSPAGAITCYQHCTHIFLPYQACKYLA 360
            ++ +E +P    G IT Y H     LP   CK +A
Sbjct: 1867 QVGTEAEPFQHQGTITLYGHQLCTELPVYGCKVIA 1901


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,061,792
Number of Sequences: 59808
Number of extensions: 309828
Number of successful extensions: 746
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 920703675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)