Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0146
         (456 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g46630.2 68418.m05740 clathrin adaptor complexes medium subun...    83   1e-16
At5g46630.1 68418.m05741 clathrin adaptor complexes medium subun...    83   1e-16
At1g60780.1 68414.m06842 clathrin adaptor complexes medium subun...    56   1e-08
At1g10730.1 68414.m01223 clathrin adaptor complexes medium subun...    56   1e-08
At4g24550.2 68417.m03519 clathrin adaptor complexes medium subun...    55   3e-08
At4g24550.1 68417.m03518 clathrin adaptor complexes medium subun...    55   3e-08
At5g23700.1 68418.m02778 hypothetical protein                          30   0.65 
At1g56590.1 68414.m06508 clathrin adaptor complexes medium subun...    30   0.65 
At5g01270.1 68418.m00036 double-stranded RNA-binding domain (DsR...    27   4.5  
At5g40480.1 68418.m04909 expressed protein ; expression supporte...    27   6.0  
At1g60430.1 68414.m06803 ARP2/3 complex 21 kDa subunit family co...    27   7.9  

>At5g46630.2 68418.m05740 clathrin adaptor complexes medium subunit
           family protein contains Pfam profile: PF00928 adaptor
           complexes medium subunit family
          Length = 441

 Score = 82.6 bits (195), Expect = 1e-16
 Identities = 34/96 (35%), Positives = 59/96 (61%)
 Frame = +2

Query: 161 PTMIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHI 340
           P     ++  N +G+VLI+R YRDD+G N VDAFR +++  ++    PV  I   SF ++
Sbjct: 2   PVAASAIYFLNLRGDVLINRTYRDDVGGNMVDAFRTHIMQTKELGNCPVRQIGGCSFVYM 61

Query: 341 KRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFG 448
           + +N+++  V   N N A  F+F+++ + + +SYFG
Sbjct: 62  RISNVYIVIVVSSNANVACGFKFVVEAVALFKSYFG 97


>At5g46630.1 68418.m05741 clathrin adaptor complexes medium subunit
           family protein contains Pfam profile: PF00928 adaptor
           complexes medium subunit family
          Length = 438

 Score = 82.6 bits (195), Expect = 1e-16
 Identities = 34/96 (35%), Positives = 59/96 (61%)
 Frame = +2

Query: 161 PTMIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHI 340
           P     ++  N +G+VLI+R YRDD+G N VDAFR +++  ++    PV  I   SF ++
Sbjct: 2   PVAASAIYFLNLRGDVLINRTYRDDVGGNMVDAFRTHIMQTKELGNCPVRQIGGCSFVYM 61

Query: 341 KRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFG 448
           + +N+++  V   N N A  F+F+++ + + +SYFG
Sbjct: 62  RISNVYIVIVVSSNANVACGFKFVVEAVALFKSYFG 97


>At1g60780.1 68414.m06842 clathrin adaptor complexes medium subunit
           family protein contains Pfam profile: PF00928 adaptor
           complexes medium subunit family
          Length = 428

 Score = 56.0 bits (129), Expect = 1e-08
 Identities = 28/94 (29%), Positives = 50/94 (53%), Gaps = 2/94 (2%)
 Frame = +2

Query: 179 LFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHAR--QQVRSPVTNIARTSFFHIKRAN 352
           LF+ + KG VL+ R YR D+     + F   +I      Q   PV      ++  ++ +N
Sbjct: 8   LFLLDIKGRVLVWRDYRGDVSAAQAERFFTKLIEKEGDSQSNDPVAYDNGVTYMFVQHSN 67

Query: 353 IWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKI 454
           ++L   ++QN NAA +  FL +++DV + YF ++
Sbjct: 68  VYLMIASRQNCNAASLLFFLHRVVDVFKHYFEEL 101


>At1g10730.1 68414.m01223 clathrin adaptor complexes medium subunit
           family protein contains Pfam profile: PF00928 adaptor
           complexes medium subunit family
          Length = 428

 Score = 56.0 bits (129), Expect = 1e-08
 Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 2/94 (2%)
 Frame = +2

Query: 179 LFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHAR--QQVRSPVTNIARTSFFHIKRAN 352
           LF+ + KG VL+ R YR D+     + F   +I      Q   PV      ++  ++ +N
Sbjct: 8   LFLLDIKGRVLVWRDYRGDVTAAQAERFFTKLIETEGDSQSNDPVAYDNGVTYMFVQHSN 67

Query: 353 IWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKI 454
           I+L   ++QN NAA +  FL +++DV + YF ++
Sbjct: 68  IYLMIASRQNCNAASLLFFLHRVVDVFKHYFEEL 101


>At4g24550.2 68417.m03519 clathrin adaptor complexes medium subunit
           family protein contains Pfam profile: PF00928 adaptor
           complexes medium subunit family
          Length = 451

 Score = 54.8 bits (126), Expect = 3e-08
 Identities = 26/97 (26%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
 Frame = +2

Query: 167 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRS---PVTNIARTSFFH 337
           MI   FV + +G+ ++ R YR ++ + + + F   V   ++   +   P+ N+   ++FH
Sbjct: 2   MISQFFVLSQRGDNIVFRDYRAEVPKGSTETFFRKVKFWKEDGNAEAPPIFNVDGVNYFH 61

Query: 338 IKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFG 448
           +K   ++  A T+ NV+ ++V E L +I  V++ Y G
Sbjct: 62  VKVVGLYFVATTRVNVSPSLVLELLQRIARVIKDYLG 98


>At4g24550.1 68417.m03518 clathrin adaptor complexes medium subunit
           family protein contains Pfam profile: PF00928 adaptor
           complexes medium subunit family
          Length = 380

 Score = 54.8 bits (126), Expect = 3e-08
 Identities = 26/97 (26%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
 Frame = +2

Query: 167 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRS---PVTNIARTSFFH 337
           MI   FV + +G+ ++ R YR ++ + + + F   V   ++   +   P+ N+   ++FH
Sbjct: 2   MISQFFVLSQRGDNIVFRDYRAEVPKGSTETFFRKVKFWKEDGNAEAPPIFNVDGVNYFH 61

Query: 338 IKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFG 448
           +K   ++  A T+ NV+ ++V E L +I  V++ Y G
Sbjct: 62  VKVVGLYFVATTRVNVSPSLVLELLQRIARVIKDYLG 98


>At5g23700.1 68418.m02778 hypothetical protein
          Length = 572

 Score = 30.3 bits (65), Expect = 0.65
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = -1

Query: 267 TLNASTALRPISSR*TLEINTSPLWL*TN---KPPIIVGEASHSFK 139
           ++ +S+  RP +   +   N SPLW+      KPP+I+    HSFK
Sbjct: 118 SVRSSSTGRPSTFSRSSTPNASPLWMPPKASLKPPVIIPPIDHSFK 163


>At1g56590.1 68414.m06508 clathrin adaptor complexes medium subunit
           family protein contains Pfam profile: PF00928 adaptor
           complexes medium subunit family
          Length = 415

 Score = 30.3 bits (65), Expect = 0.65
 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 2/96 (2%)
 Frame = +2

Query: 167 MIGGLFVYNHKGEVLISRVYRDD-IGRNAVDAFRVNVIHARQQVRS-PVTNIARTSFFHI 340
           M+  +F+ +  GEV++ +      + R+    F    I      ++ PV        F I
Sbjct: 1   MLQCIFLISDSGEVMLEKQLTGHRVDRSICAWFWDQYISQGDSFKALPVIASPTHYLFQI 60

Query: 341 KRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFG 448
            R  I   A ++  +   M  EFL ++ DV+  Y G
Sbjct: 61  VRDGITFLACSQVEMPPLMAIEFLCRVADVLSEYLG 96


>At5g01270.1 68418.m00036 double-stranded RNA-binding domain
           (DsRBD)-containing protein contains Pfam profile
           PF00035: Double-stranded RNA binding motif
          Length = 771

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -3

Query: 274 HIHSECVHSITTNIISVDSRDQHLAFMVVNEQ 179
           H+H+ C H + T ++ +   + HL  M   E+
Sbjct: 81  HLHAVCFHELKTAVVMLGDEEIHLVAMPSKEK 112


>At5g40480.1 68418.m04909 expressed protein ; expression supported by
            MPSS
          Length = 1919

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 194  HKGEVLISRVYRDDIGRNAVDAFRVNVIHARQ 289
            +KG + IS + RDD G      ++VNV+ + Q
Sbjct: 1757 NKGRLSISLIKRDDFGIAGHAQYKVNVLRSEQ 1788


>At1g60430.1 68414.m06803 ARP2/3 complex 21 kDa subunit family
           contains Pfam PF04062: P21-ARC (ARP2/3 complex 21 kDa
           subunit); similar to Arp2/3 complex subunit p21-Arc
           (GI:6983853) [Mus musculus]; similar to ARP2/3 complex
           21 kDa subunit (P21-ARC) (Actin-related protein 2/3
           complex subunit 3) (Swiss-Prot:O15145) [Homo sapiens];
           similar to Chain E, Crystal Structure Of Arp23 COMPLEX
           Length(GI:17943203) [
          Length = 174

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = +2

Query: 197 KGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHIKRA 349
           KG   +S   + DI   A+  FR NV      ++SP   +     F+I  A
Sbjct: 29  KGPAPVSEQDKTDIVDEAITFFRANVFFTNFDIKSPADKLLIYLTFYINVA 79


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,352,975
Number of Sequences: 28952
Number of extensions: 208115
Number of successful extensions: 417
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 752336160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)