Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0145
         (646 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_05_0079 + 18914668-18914753,18915123-18915338,18915829-189158...    31   0.78 
02_04_0625 - 24547435-24547569,24547674-24547742,24547871-245479...    29   3.2  
01_06_0968 + 33466574-33466607,33467087-33467115,33467438-334675...    27   9.7  

>11_05_0079 +
           18914668-18914753,18915123-18915338,18915829-18915895,
           18916656-18916723,18916999-18917125,18918240-18918339,
           18918405-18918433,18918678-18918730,18919246-18919732
          Length = 410

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = -3

Query: 524 DFVVPQSINIIPKLLYKINLKQTKGIRPTGDTSKGKQNCYFYLIPSIFI 378
           DF++P  +  +P +L  +++    G      T   K   Y YL P + I
Sbjct: 310 DFLLPTVVGCLPMILQNVSIVSLAGAAVASTTGSEKSRIYSYLFPVLGI 358


>02_04_0625 - 24547435-24547569,24547674-24547742,24547871-24547997,
            24548086-24548209,24548714-24548832,24548953-24549044,
            24549124-24549329,24549429-24549534,24549636-24549740,
            24549836-24549942,24550030-24550253,24550341-24550468,
            24550945-24551022,24551338-24552012,24552655-24552798,
            24552985-24553064,24553958-24554029,24554124-24554343,
            24554460-24554590,24555118-24555243,24555567-24555695,
            24556156-24556318,24556408-24556545,24557198-24557317,
            24557521-24557682,24557751-24557876,24558172-24558342,
            24558435-24558590,24559061-24559408
          Length = 1526

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 18/65 (27%), Positives = 30/65 (46%)
 Frame = -3

Query: 332  RPKLAKSVQPSFSETNEQQXXXXXXXXXXXYAAKTSYINKRRKCASYCDIIKLNTKDAKT 153
            RPK+AKS        +E+Q            A+ T+  NK+ K  S  D++    +  K+
Sbjct: 879  RPKVAKSSPKLSKPASERQEVKRTSAKKTSGASTTAKKNKKEKADSSNDVLDAIPEQNKS 938

Query: 152  SIIIY 138
            +I+ Y
Sbjct: 939  NIMNY 943


>01_06_0968 +
           33466574-33466607,33467087-33467115,33467438-33467595,
           33468319-33468436,33468520-33468708,33469008-33469343,
           33469468-33469569,33469696-33469890,33469993-33470155,
           33470314-33470579,33470670-33470765,33470860-33471255,
           33471403-33471501
          Length = 726

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 33  LNRDFSIRSQ*TYRCRWSVLIHNN 104
           + + F +    T+RC+W VL+H +
Sbjct: 515 MRKTFDLLRNLTHRCKWDVLVHGS 538


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,139,628
Number of Sequences: 37544
Number of extensions: 279212
Number of successful extensions: 501
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)