Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0145
         (646 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53106| Best HMM Match : PLAT (HMM E-Value=0)                        31   1.1  
SB_42577| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_14165| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45)               28   7.5  
SB_40275| Best HMM Match : Cadherin (HMM E-Value=0)                    28   7.5  
SB_44780| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-34)                 27   9.9  

>SB_53106| Best HMM Match : PLAT (HMM E-Value=0)
          Length = 1790

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -2

Query: 585  FITFDRGRCDKFILHTS*PGRLRSASIDKYNT 490
            F  F+RGR DKF++ T+  G+L    I   NT
Sbjct: 954  FKRFERGRADKFVVQTADVGKLNRMVIGHNNT 985


>SB_42577| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 85

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = -3

Query: 578 HSIAGVVTNLYYILADPADFVVPQSINIIPKLLYKINLKQTKG 450
           H IAG    L+  + D  D V+ +  N++P++ + I+ ++ KG
Sbjct: 9   HEIAGNEGFLWLAVVDCIDGVIGKGSNLVPRVFWVISKRENKG 51


>SB_14165| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1837

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -3

Query: 542 ILADPADFVVPQSINIIPKLLYKINLKQTKGIRPT 438
           IL+DP++F +P S + +   ++KINL       P+
Sbjct: 697 ILSDPSNFTLPVSFSYVFSSVFKINLDDVTARSPS 731


>SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45)
          Length = 649

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -3

Query: 524 DFVVPQSINIIPK-LLYKINLKQTKGIRPTGDT 429
           DF   +  N +PK  +YK+  ++T+G+ P+ DT
Sbjct: 219 DFEKSELCNWLPKQTVYKLKWQRTQGVTPSSDT 251


>SB_40275| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 1747

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 19/68 (27%), Positives = 30/68 (44%)
 Frame = -3

Query: 608  ISCKKNVTL*HSIAGVVTNLYYILADPADFVVPQSINIIPKLLYKINLKQTKGIRPTGDT 429
            +   KN+ +  S   V +  Y  +  PA  +   SI+I+PK LY+      K  +P    
Sbjct: 946  VGVAKNILVRSSNFSVASGDYGKVPAPASSLTIVSIDILPKCLYEAVFPPEKRCKPHNPC 1005

Query: 428  SKGKQNCY 405
              G + CY
Sbjct: 1006 LHGGK-CY 1012


>SB_44780| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-34)
          Length = 747

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +1

Query: 415 CFPFDVSPVGRIPFVCFKFIL 477
           C PFDVS  G I +V F   L
Sbjct: 442 CLPFDVSTTGSIAYVAFLLFL 462


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,370,172
Number of Sequences: 59808
Number of extensions: 354670
Number of successful extensions: 834
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)