Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0145
         (646 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31870.1 68417.m04528 glutathione peroxidase, putative glutat...    30   1.1  
At4g02480.1 68417.m00335 AAA-type ATPase family protein contains...    28   4.6  
At3g05090.2 68416.m00553 transducin family protein / WD-40 repea...    28   6.1  
At3g05090.1 68416.m00552 transducin family protein / WD-40 repea...    28   6.1  
At4g25240.1 68417.m03632 multi-copper oxidase type I family prot...    27   8.1  

>At4g31870.1 68417.m04528 glutathione peroxidase, putative
           glutathione peroxidase, Arabidopsis thaliana,
           PIR2:S71250
          Length = 233

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -2

Query: 465 KTNK-RNPSDGGHIKGKTKLLFLFNSKHFHIYS 370
           +T+K RNPS+G  +K      FL  SK+F +Y+
Sbjct: 36  RTSKTRNPSNGVSVKSSNSHRFLVKSKNFSVYA 68


>At4g02480.1 68417.m00335 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family; similar to
           Spastin (Swiss-Prot:Q9UBP0) [Homo sapiens] and Spastin
           (Fragment) (Swiss-Prot:Q9QYY8) [Mus musculus]; similar
           to mitochondrial sorting protein 1 (MSP1) protein
           (TAT-binding homolog 4) (Swiss-Prot:P28737)
           [Saccharomyces cerevisiae]
          Length = 1265

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 432 HIKGKTKLLFLFNSKHFHIYSPFK 361
           H++G  +++F  N KH +I+ P K
Sbjct: 224 HLRGGDEVIFSLNGKHAYIFQPVK 247


>At3g05090.2 68416.m00553 transducin family protein / WD-40 repeat
           family protein contains seven G-protein beta WD-40
           repeats; similar to uncharacterized KIAA1449 protein
           (gi:7959157) [Homo sapiens]
          Length = 753

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 89  NGPTASIRLLASYRKVTIQSSP 24
           NGP  S+R + S   +++QSSP
Sbjct: 179 NGPVTSLRTVGSSNNISVQSSP 200


>At3g05090.1 68416.m00552 transducin family protein / WD-40 repeat
           family protein contains seven G-protein beta WD-40
           repeats; similar to uncharacterized KIAA1449 protein
           (gi:7959157) [Homo sapiens]
          Length = 753

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 89  NGPTASIRLLASYRKVTIQSSP 24
           NGP  S+R + S   +++QSSP
Sbjct: 179 NGPVTSLRTVGSSNNISVQSSP 200


>At4g25240.1 68417.m03632 multi-copper oxidase type I family protein
           pollen-specific protein precursor -Nicotiana tabacum,
           PID:g19902; contains Pfam profile: PF00394 Multicopper
           oxidase
          Length = 589

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 404 NNNFVFPLMCPPSDGFLLFVLSLFYTK 484
           NN  + P+  P  DG L+F++  +YT+
Sbjct: 146 NNRDIIPIPFPQPDGELIFIIGDWYTQ 172


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,813,371
Number of Sequences: 28952
Number of extensions: 248258
Number of successful extensions: 465
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)