Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0144
(501 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 224 5e-60
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 135 3e-33
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 132 4e-32
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 126 2e-30
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 83 2e-17
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 81 7e-17
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 68 7e-13
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 55 7e-09
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.056
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.30
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 27 1.2
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 2.1
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 27 2.1
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 2.8
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 26 2.8
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 25 4.8
SPBC14F5.05c |sam1||S-adenosylmethionine synthetase |Schizosacch... 25 4.8
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 25 6.4
SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-... 25 8.4
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 8.4
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 224 bits (548), Expect = 5e-60
Identities = 104/115 (90%), Positives = 108/115 (93%), Gaps = 1/115 (0%)
Frame = +1
Query: 43 EAEQKR-YLTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR 219
EA+ KR LTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NR
Sbjct: 57 EAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNR 116
Query: 220 EKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYAL 384
EKMTQI+FETFN PA YVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPIYEGYAL
Sbjct: 117 EKMTQIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYAL 171
Score = 72.1 bits (169), Expect = 4e-14
Identities = 33/37 (89%), Positives = 36/37 (97%)
Frame = +2
Query: 389 HAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIV 499
HAI+RLDLAGRDLTDYLMKIL ERGY+F+TTAEREIV
Sbjct: 173 HAIMRLDLAGRDLTDYLMKILMERGYTFSTTAEREIV 209
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 135 bits (327), Expect = 3e-33
Identities = 60/115 (52%), Positives = 86/115 (74%), Gaps = 1/115 (0%)
Frame = +1
Query: 43 EAEQKR-YLTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANR 219
EAE R L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP ANR
Sbjct: 57 EAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANR 116
Query: 220 EKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYAL 384
EKM + MFE + +YVAIQAVLSLYA G ++G+V+DSGDGV+H VP+YE L
Sbjct: 117 EKMCETMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVL 171
Score = 44.0 bits (99), Expect = 1e-05
Identities = 19/37 (51%), Positives = 26/37 (70%)
Frame = +2
Query: 389 HAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIV 499
H + RLD+AGRD T YL+ +L +GY+F TA+ E V
Sbjct: 173 HLVGRLDVAGRDATRYLISLLLRKGYAFNRTADFETV 209
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 132 bits (318), Expect = 4e-32
Identities = 60/118 (50%), Positives = 86/118 (72%), Gaps = 2/118 (1%)
Frame = +1
Query: 43 EAEQKR-YLTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKAN 216
EA+ R L ++ PIE GI+ NW DME+IW + + ++ L PEEHP+LLTE PL N
Sbjct: 61 EAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRN 120
Query: 217 REKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALXS 390
+EK+ + +ET N PA+ ++Q VL+LYAS RTTGIVL+ GDG++H+VPIY+G+++ S
Sbjct: 121 KEKIAEYFYETLNVPALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPS 178
Score = 36.3 bits (80), Expect = 0.003
Identities = 16/36 (44%), Positives = 25/36 (69%)
Frame = +2
Query: 392 AILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIV 499
AI + ++ GRD+TDYL L + G+ ++AE+EIV
Sbjct: 179 AIQQEEIGGRDVTDYLQLQLRKSGHELVSSAEKEIV 214
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 126 bits (303), Expect = 2e-30
Identities = 58/116 (50%), Positives = 76/116 (65%), Gaps = 8/116 (6%)
Frame = +1
Query: 67 TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 246
+L YPI HG + NWD ME+ W + + LR PE+H LLTE PLNP NRE +IMFE
Sbjct: 89 SLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFE 148
Query: 247 TFNTPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALXS 390
+FN +Y+A+QAVL+L AS + TG V+DSGDGV+H +P+ EGY + S
Sbjct: 149 SFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGS 204
Score = 24.6 bits (51), Expect = 8.4
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +2
Query: 392 AILRLDLAGRDLTDYLMKILTERGY--SFTTTAER 490
+I + LAGRD+T ++ +L +R S TAER
Sbjct: 205 SIKTMPLAGRDVTYFVQSLLRDRNEPDSSLKTAER 239
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 83.4 bits (197), Expect = 2e-17
Identities = 40/107 (37%), Positives = 59/107 (55%)
Frame = +1
Query: 64 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 243
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K + MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 244 ETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYAL 384
E+ PA Y+A Q + +ASG+ T ++D G S IY+G+ L
Sbjct: 123 ESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVL 169
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 81.4 bits (192), Expect = 7e-17
Identities = 39/117 (33%), Positives = 66/117 (56%), Gaps = 2/117 (1%)
Frame = +1
Query: 79 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 258
P E +++NWD ME++ +TF +L + EHP+ +TE NP R MT+++FE +N
Sbjct: 86 PFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFELYNA 144
Query: 259 PAMYVAIQAVLSLYASGR--TTGIVLDSGDGVSHTVPIYEGYALXSRHPASGLGRSR 423
P++ I + S Y + + ++GIVL+ G+ SH +P+ G + S G S+
Sbjct: 145 PSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVIPVLNGERILSEAKRISWGGSQ 201
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 68.1 bits (159), Expect = 7e-13
Identities = 27/96 (28%), Positives = 55/96 (57%)
Frame = +1
Query: 88 HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAM 267
+GI+ +W+ W +L+V P E+ +++TE NP++ R+++ + FE + PA
Sbjct: 74 NGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAF 133
Query: 268 YVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEG 375
Y+ QAV +A+ ++T +++D G + P+ +G
Sbjct: 134 YLTKQAVCVAFANSKSTALIVDIGSDNASVTPVVDG 169
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 54.8 bits (126), Expect = 7e-09
Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 4/116 (3%)
Frame = +1
Query: 79 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 246
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 247 TFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALXSRHPASGLG 414
P +A + ++ LYA G G+V+D G + PI +G + + LG
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPLG 227
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.9 bits (69), Expect = 0.056
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +1
Query: 139 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 282
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.5 bits (63), Expect = 0.30
Identities = 26/81 (32%), Positives = 32/81 (39%)
Frame = +2
Query: 137 PSTMSSVSPPRNIPSFSXXXXXXXXXXXXXXXXXCSKHSTRPPCTSPSKPCSRCTRPVVP 316
P++ SS S P IP S C+ ++ PP T S S P VP
Sbjct: 140 PTSTSSTSIP--IPPTSTSSTDTNSNPLPTTSTSCTTSTSIPP-TGGSSSLSTPITPTVP 196
Query: 317 PVSCWTPATVSPTPYPSTRDT 379
P S T +T P P ST T
Sbjct: 197 PTS--TSSTSIPIPPTSTSST 215
Score = 27.1 bits (57), Expect = 1.6
Identities = 18/47 (38%), Positives = 22/47 (46%)
Frame = +2
Query: 239 CSKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPYPSTRDT 379
C+ ++ PP T S S P VPP S T +T P P ST T
Sbjct: 115 CTTSTSIPP-TGGSSSLSTPITPTVPPTS--TSSTSIPIPPTSTSST 158
Score = 25.8 bits (54), Expect = 3.7
Identities = 25/81 (30%), Positives = 31/81 (38%)
Frame = +2
Query: 137 PSTMSSVSPPRNIPSFSXXXXXXXXXXXXXXXXXCSKHSTRPPCTSPSKPCSRCTRPVVP 316
P++ SS S P IP S C+ ++ P T S S P VP
Sbjct: 197 PTSTSSTSIP--IPPTSTSSTDTNSSPLPTTSTSCTTSTSIP--TGGSSSLSTPITPTVP 252
Query: 317 PVSCWTPATVSPTPYPSTRDT 379
P S T +T P P ST T
Sbjct: 253 PTS--TSSTSIPIPPTSTSST 271
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 27.5 bits (58), Expect = 1.2
Identities = 10/26 (38%), Positives = 20/26 (76%)
Frame = +2
Query: 392 AILRLDLAGRDLTDYLMKILTERGYS 469
A+ R+D+ G+ LT+YL ++++ R Y+
Sbjct: 182 AVKRVDVGGKLLTNYLKEVISYRKYN 207
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.6 bits (56), Expect = 2.1
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +2
Query: 263 PCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPYPST 370
P T+P P T PV P S P+ P P PS+
Sbjct: 1037 PSTAPPVPIPTSTPPV-PKSSSGAPSAPPPVPAPSS 1071
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 26.6 bits (56), Expect = 2.1
Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Frame = +2
Query: 260 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPYPS-TRDTHSXHAILRLDLAGRDLTD 433
PP P + T PV PV+ A P P P+ + H + D A + D
Sbjct: 367 PPPVMPQPAAAAVTTPVAAPVAAAAAAVPVPPPAPAPAAAPAAEHVVALYDYAAQAAGD 425
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 2.8
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 181 LLTEAPLNPKANREKMTQIMFETFN 255
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 26.2 bits (55), Expect = 2.8
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 284 PCSRCTRPVVPPVSCWTPATVSPTPYPST 370
P SR T+P+ S +P VSP PST
Sbjct: 262 PVSRLTQPLPSLASTASPQQVSPPAAPST 290
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 25.4 bits (53), Expect = 4.8
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +3
Query: 300 RVRSYHRYRAGLRRRCLPHRTHL 368
R RS HR+ G RR P+RTHL
Sbjct: 142 RTRSNHRH--GSHRRHEPYRTHL 162
>SPBC14F5.05c |sam1||S-adenosylmethionine synthetase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 382
Score = 25.4 bits (53), Expect = 4.8
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 282 SRALAVRVRSYHRYRAGLRRRCLPHRTHLRGIRTPLT 392
S A A R + AGL RRCL ++ G+ PL+
Sbjct: 280 SAAYAARWIAKSLVAAGLARRCLVQLSYAIGVAEPLS 316
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 25.0 bits (52), Expect = 6.4
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 281 KPCSRCTRPVVPPVSCWTPATVSPTPYP 364
KP S+ TRP +P + T +V P P P
Sbjct: 65 KPSSKATRPYIPSYTRLT-YSVPPLPIP 91
>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
[UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 24.6 bits (51), Expect = 8.4
Identities = 15/49 (30%), Positives = 20/49 (40%)
Frame = +1
Query: 22 PGCRNRHEAEQKRYLTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 168
PG N E + Y Y IV N D + IW ++ L V P+
Sbjct: 120 PGEINFDEENWEAYRAANYAFAEAIVKNLQDGDLIWVQDYH--LMVLPQ 166
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 24.6 bits (51), Expect = 8.4
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = +2
Query: 299 TRPVVPPVSCWTPATVSPTPYPSTRDT 379
T P S TPA V P P PST T
Sbjct: 833 TSPYATTSSHITPADVHPLPPPSTSTT 859
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,100,910
Number of Sequences: 5004
Number of extensions: 43118
Number of successful extensions: 171
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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