Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0143
         (458 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    66   2e-12
SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei...    28   0.60 
SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|ch...    27   1.8  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    27   1.8  
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase...    26   2.4  
SPAC824.03c |||conserved fungal protein|Schizosaccharomyces pomb...    26   3.2  
SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyce...    25   4.2  
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ...    25   5.6  
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    25   5.6  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   7.3  
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc...    25   7.3  
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ...    24   9.7  

>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 66.1 bits (154), Expect = 2e-12
 Identities = 38/87 (43%), Positives = 46/87 (52%)
 Frame = +1

Query: 40  TFLVNSAAHLWGYKPYDKSLKATQSGMANAFTFGEGFHNYHHVFPWDYRADELGDRYINL 219
           TF VNS AHL G +P+D +  A    +    T GEG HNYHH FP DYR       Y + 
Sbjct: 247 TFCVNSLAHLIGSQPFDDTNSARNHFITALVTLGEGNHNYHHAFPNDYRNGLRWYEY-DP 305

Query: 220 TTRFIDFFAWMGWAYDLKTASTNIIEK 300
           T  FI   +  G AY+L T   N I+K
Sbjct: 306 TKIFIYIASLFGLAYNLNTFPDNEIQK 332


>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
           Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 28.3 bits (60), Expect = 0.60
 Identities = 9/38 (23%), Positives = 20/38 (52%)
 Frame = -3

Query: 273 FQIISPSHPCKEIYEPCCQIYVPVPQFVCPIIPRKNVM 160
           ++ ++   PCK +  P C I      ++CP   ++N++
Sbjct: 51  YEPVTCKAPCKAVLNPYCHIDTRAKFWICPFCLQRNML 88


>SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 469

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 11/20 (55%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
 Frame = -3

Query: 294 NNIGGSS-FQIISPSHPCKE 238
           NNI     F +I P HPCKE
Sbjct: 414 NNIADDDLFDVILPKHPCKE 433


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 11/46 (23%), Positives = 24/46 (52%)
 Frame = +3

Query: 306 TKNRGWDLQTTKWNELKQSSKSFFA*YHFFDDFCKVIQKQASGISY 443
           TK++ W     +W+++ +  +   A   F D +C++  +   G+SY
Sbjct: 638 TKDQEWRRSKREWSKIWRQIEKKNAQAAFDDRYCRIEGRDRRGLSY 683


>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
           desaturase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 362

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 115 GMANAFTFGEGFHNYHHVFPW 177
           G  N F +  G+H  HH FP+
Sbjct: 278 GPLNFFVYNAGYHIEHHDFPY 298


>SPAC824.03c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 247

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 91  KSLKATQSGMANAFTFGEGFHNYHHVFPWDYRA 189
           K+L  +   +A    + +GFH+Y   F W+++A
Sbjct: 148 KTLSISNRPLALCRIYVDGFHSYMFQFVWNHQA 180


>SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 456

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -2

Query: 70 TNEQRYLQEKCLQPGGSTSL 11
          TNE+ Y++    QPGGS+SL
Sbjct: 40 TNERFYIRGVDYQPGGSSSL 59


>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = -3

Query: 216 IYVPVPQFVCPIIPRKNVMVIVKSFTKSKCICHATLSSFQALIV 85
           +Y  +P  +  ++P  ++      F K K   +A L++FQ L +
Sbjct: 189 LYNGLPATLLNVVPYVSICFFTFEFCKQKFFSNADLTAFQKLFL 232


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -3

Query: 384 ITQRSFLKTVSIHSIWSFVSPIPCS*CPLLNNIGGSSFQII 262
           +   S ++   I+S+ +F S + CS C  L  +GG S  ++
Sbjct: 313 VMHMSIVQVGFINSVKTFGSLLTCSVCLFLTYVGGFSVHMM 353


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -1

Query: 431  ASLFLNNFAKVIKKVIL 381
            AS+F+NNF  +IK++ L
Sbjct: 4908 ASVFINNFVTIIKEIEL 4924


>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 765

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 7/28 (25%), Positives = 15/28 (53%)
 Frame = -3

Query: 249 PCKEIYEPCCQIYVPVPQFVCPIIPRKN 166
           PC+ +  P C + +    ++CP   ++N
Sbjct: 59  PCRAVLNPYCHVDLRARFWICPFCFQRN 86


>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 409

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +1

Query: 256 WAYDLKTASTNIIEKR 303
           W  DLKT S+ IIE R
Sbjct: 316 WEQDLKTMSSRIIEMR 331


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,905,114
Number of Sequences: 5004
Number of extensions: 40222
Number of successful extensions: 89
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)