Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0143
(458 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 33 0.15
07_01_0733 + 5570084-5570282,5570395-5570600,5572484-5572624,557... 29 1.4
01_06_0986 - 33602714-33602741,33603037-33603146,33603401-336036... 29 1.8
08_02_1133 + 24554037-24554043,24554524-24554797,24554890-245549... 28 3.1
06_01_0581 - 4153668-4153883,4154070-4155104,4155718-4156292,415... 28 4.2
10_01_0217 + 2337950-2338085,2340766-2342436,2342636-2342898,234... 27 5.5
02_05_0082 + 25679089-25679253,25680998-25681030,25681758-25682579 27 7.3
08_02_0823 + 21557111-21557292,21557391-21557473,21557722-215578... 27 9.6
06_01_1064 - 8609162-8610583 27 9.6
02_02_0333 + 9042393-9043610 27 9.6
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 32.7 bits (71), Expect = 0.15
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = -3
Query: 255 SHPCKEIYEPCCQIYVPVPQFVCPIIPRKNVMVIVKSFTKSKCICHATLSSFQAL 91
+ PC+E PC ++ P CP+ N K+ K C C A + +F+ +
Sbjct: 571 AEPCEECNLPCQRVREPPCSHPCPLPCHLNDCPPCKALVKRPCHCGAMVHAFECM 625
>07_01_0733 +
5570084-5570282,5570395-5570600,5572484-5572624,
5572773-5572949,5573049-5573145,5573575-5573687,
5573774-5573896,5574004-5574075,5575340-5575432,
5575564-5575674,5575767-5575889,5576834-5576890,
5576939-5577022,5577140-5577214,5577418-5577554,
5577719-5577853,5579029-5579168,5579334-5579399,
5579732-5579838,5579910-5579990,5580064-5580138,
5580224-5580325,5581837-5582005,5582090-5582217,
5582596-5582679,5582779-5582879,5583729-5583882,
5583964-5584038,5584112-5584262,5584463-5585078,
5585427-5585487,5585874-5586019,5586104-5586287,
5586363-5586440,5586603-5586931,5587023-5587199,
5587571-5587667,5587742-5587897,5587962-5588198,
5588271-5588354,5588426-5588486,5588762-5588898
Length = 1912
Score = 29.5 bits (63), Expect = 1.4
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 34 AGTFLVNSAAHLWGYKPYDKSLKATQSGMANAFTFGEGFHNY 159
AG F V HL G+ P DK++ + ++NAF G+ ++
Sbjct: 761 AGCF-VRFLGHLTGFSPKDKAVDRSVEKLSNAFYVGQSVRSH 801
>01_06_0986 -
33602714-33602741,33603037-33603146,33603401-33603601,
33604605-33604697,33604937-33605182,33606007-33606372,
33606459-33606599,33607170-33607526
Length = 513
Score = 29.1 bits (62), Expect = 1.8
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +3
Query: 108 SKWHGKCIYFW*RISQLPSRFSVGLSGRRIGGQVHKFDNKVHRFLCMD 251
++W G C Y ++ F G G GG +H NK H + C+D
Sbjct: 87 AEWKGACFYD----NRAWMEFHNGTDGGLGGGTLHLETNKAHSWTCID 130
>08_02_1133 +
24554037-24554043,24554524-24554797,24554890-24554989,
24555089-24555355,24555455-24555532,24555616-24555717,
24555798-24555847,24555916-24556051,24556374-24556490,
24556659-24556818,24557450-24557811,24558075-24558152,
24558274-24558294
Length = 583
Score = 28.3 bits (60), Expect = 3.1
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 10/62 (16%)
Frame = -3
Query: 186 PIIPRKNVMVIVKSFTKSKCI----------CHATLSSFQALIVRFVSPQMSSAIYKKSA 37
P IPR+ +++ SF + KCI HAT+ +AL+ + Q SS K+
Sbjct: 522 PEIPREKEHMLLNSFERIKCIEADLERTKRVLHATVVKQKALVETLEAVQESSRARKRLF 581
Query: 36 CS 31
CS
Sbjct: 582 CS 583
>06_01_0581 -
4153668-4153883,4154070-4155104,4155718-4156292,
4158457-4158826,4159925-4160590,4161008-4161223,
4161725-4161793
Length = 1048
Score = 27.9 bits (59), Expect = 4.2
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 93 EPESYSKWHGKCIYFW 140
E E SKW +C YFW
Sbjct: 3 EVEEVSKWRRRCCYFW 18
>10_01_0217 +
2337950-2338085,2340766-2342436,2342636-2342898,
2343027-2343236,2343436-2343654,2344038-2345000,
2345279-2345374,2345482-2345580,2345953-2346142,
2346594-2346823
Length = 1358
Score = 27.5 bits (58), Expect = 5.5
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +1
Query: 241 FAWMGWAYDLKTASTNIIEKRALRT-GD 321
++W A+D+K TN+ K A+R GD
Sbjct: 914 YSWGALAFDIKVCKTNVSSKSAMRAPGD 941
>02_05_0082 + 25679089-25679253,25680998-25681030,25681758-25682579
Length = 339
Score = 27.1 bits (57), Expect = 7.3
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +1
Query: 115 GMANAFTFGEGFHNYHHVFP 174
G N T+ G+HN HH FP
Sbjct: 265 GPLNLMTWHVGYHNEHHDFP 284
>08_02_0823 +
21557111-21557292,21557391-21557473,21557722-21557810,
21557985-21558058,21558264-21558314,21558406-21558482,
21560206-21560900
Length = 416
Score = 26.6 bits (56), Expect = 9.6
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +1
Query: 85 YDKSLKATQSGMANAFTFGEGFHNYHHVFPWDYRADEL-GDRYINLTT 225
Y SL+ SG + + G +HH W+ R + G++Y+ L T
Sbjct: 137 YIGSLRRKSSGFSRGVSKYRGVARHHHNGKWEARIGRVFGNKYLYLGT 184
>06_01_1064 - 8609162-8610583
Length = 473
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -3
Query: 222 CQIYVPVPQFVCPIIPRKNVMVIVKSFTKSKCICHATLSS 103
C ++ P P FV I+ R + ++S S C A+L S
Sbjct: 171 CSLFCPTPSFVDMIVNRYKLRSDIRSMHLSGMGCSASLIS 210
>02_02_0333 + 9042393-9043610
Length = 405
Score = 26.6 bits (56), Expect = 9.6
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +3
Query: 321 WDLQTTKWNELKQSSKSFFA*YHFFDD 401
W+L+ +W+E+ + FF + FDD
Sbjct: 318 WELRNKEWHEVARMPHKFFQGFGEFDD 344
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,369,682
Number of Sequences: 37544
Number of extensions: 259645
Number of successful extensions: 553
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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