Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0141
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    27   2.9  
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz...    26   5.1  
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ...    25   6.8  
SPAC24B11.05 |||pyrimidine 5'-nucleotidase |Schizosaccharomyces ...    25   9.0  

>SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 526

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 626 SDYCDFESKDYFHPMRPL*YKMIFRSISITTN 531
           ++ C F+ K YF+P  P  Y++  + I I  N
Sbjct: 74  ANVCKFDRKHYFYPDLPAGYQITQKEIPIGRN 105


>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 218

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 2   GALARGWPQNQPNNTYCKVTACHQSESNLILCSDKGEIKF 121
           G + +  P+ + N + C    C   E +L  CS KG +KF
Sbjct: 86  GHIVQDCPEAKDNVSIC--FRCGSKEHSLNACSKKGPLKF 123


>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 528

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 17/54 (31%), Positives = 23/54 (42%)
 Frame = -2

Query: 181 NFRCSASDCCKFLRRIAIVHKLYFSFVRAKNQVAFALVTRCYLTVSIIWLVLRP 20
           NF  S+S C KF R +AI       F R      F+   RC+     +W +  P
Sbjct: 36  NFVISSS-CTKF-RNVAIQRNAKREFSRCAALKNFSYHARCFHATRAVWEMTDP 87


>SPAC24B11.05 |||pyrimidine 5'-nucleotidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 226

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -1

Query: 620 YCDFESKDYFHPMRPL*YKMIFRSISIT 537
           YCD+ +KD      P  Y+ + R   +T
Sbjct: 137 YCDYNAKDLIAKPMPEMYERVMREAGVT 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,234,482
Number of Sequences: 5004
Number of extensions: 38202
Number of successful extensions: 78
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)