Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0141
         (626 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11385.1 68416.m01386 DC1 domain-containing protein contains ...    27   7.7  
At1g65140.1 68414.m07385 ubiquitin carboxyl-terminal hydrolase f...    27   7.7  

>At3g11385.1 68416.m01386 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 766

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 288 SCSPKFHGNLSFGTQNSNAESQVPMTKTPLRYCNC 184
           S SP+F GN  FG   S  E+  PMT+  + + +C
Sbjct: 188 SLSPRFGGNTKFGC-FSCGENTSPMTEDQIYHFSC 221


>At1g65140.1 68414.m07385 ubiquitin carboxyl-terminal hydrolase
           family protein contains Pfam profile PF00443: Ubiquitin
           carboxyl-terminal hydrolase
          Length = 331

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = -3

Query: 369 INISQLLMNWKQEFVISMLHTLLCW*CSCSPKFHGNLSFG 250
           +NI +L+  W   F ++ +   +C  C     + G  S+G
Sbjct: 119 LNILELIPRWNYHFEVNEVAKTICIRCKTDMAYSGETSYG 158


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,215,851
Number of Sequences: 28952
Number of extensions: 184956
Number of successful extensions: 387
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)