Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0140
         (673 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39285| Best HMM Match : Proteasome (HMM E-Value=0)                 248   4e-66
SB_47434| Best HMM Match : Proteasome (HMM E-Value=4.3e-17)            81   1e-15
SB_31216| Best HMM Match : Proteasome (HMM E-Value=2.8e-35)            68   6e-12
SB_40821| Best HMM Match : No HMM Matches (HMM E-Value=.)              43   3e-04
SB_40084| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.013
SB_46004| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.37 
SB_510| Best HMM Match : No HMM Matches (HMM E-Value=.)                32   0.48 
SB_41821| Best HMM Match : Borrelia_orfA (HMM E-Value=2.7)             31   0.64 
SB_37203| Best HMM Match : HALZ (HMM E-Value=6.6)                      29   4.5  
SB_287| Best HMM Match : Pentapeptide (HMM E-Value=0.1)                28   6.0  
SB_24503| Best HMM Match : Transket_pyr (HMM E-Value=0)                28   7.9  

>SB_39285| Best HMM Match : Proteasome (HMM E-Value=0)
          Length = 215

 Score =  248 bits (606), Expect = 4e-66
 Identities = 116/157 (73%), Positives = 132/157 (84%)
 Frame = +3

Query: 81  AITVFSPDGHLLQVEYAQEAVRKGSTAXXXXXXXXXXXXXEKKSVAKLQEERTVRKICLL 260
           AITVFSPDGHL QVEYAQEAV+KGSTA             E+K+VAKLQE RTVRKIC L
Sbjct: 8   AITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGNNIVVLGVERKAVAKLQEPRTVRKICTL 67

Query: 261 DDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRR 440
           DDHV+MAFAGLTADARIL+N+A++ECQSHKLTVEDPVTLEYITR+IA LKQ+YTQSNGRR
Sbjct: 68  DDHVLMAFAGLTADARILVNKARVECQSHKLTVEDPVTLEYITRFIATLKQRYTQSNGRR 127

Query: 441 PFGISCLIGGFDYDGSPHLFQTEPSGIYYEWKANATG 551
           PFGIS LI GFD+DG+P L+QT+PSG Y+ WK   +G
Sbjct: 128 PFGISTLIVGFDFDGTPRLYQTDPSGTYHAWKVVQSG 164


>SB_47434| Best HMM Match : Proteasome (HMM E-Value=4.3e-17)
          Length = 308

 Score = 80.6 bits (190), Expect = 1e-15
 Identities = 41/119 (34%), Positives = 63/119 (52%)
 Frame = +3

Query: 93  FSPDGHLLQVEYAQEAVRKGSTAXXXXXXXXXXXXXEKKSVAKLQEERTVRKICLLDDHV 272
           FSPDG + QVEYA +AV    TA             EK  ++KL E    ++I  +D H+
Sbjct: 144 FSPDGRVFQVEYANKAVENSGTAIAIRCKDGVVFGVEKLVLSKLYEYGANKRIFHIDTHI 203

Query: 273 VMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFG 449
            MA AGL AD+R ++  A+ E  +++     P+ L+Y+   ++G    +T  +  RPFG
Sbjct: 204 GMAIAGLIADSRQIVATAREEAANYRSVYGSPIPLKYLVNRVSGFIHAFTLYSAMRPFG 262


>SB_31216| Best HMM Match : Proteasome (HMM E-Value=2.8e-35)
          Length = 224

 Score = 68.1 bits (159), Expect = 6e-12
 Identities = 37/124 (29%), Positives = 61/124 (49%)
 Frame = +3

Query: 297 ADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFGISCLIGGFD 476
           AD+R  + RA+ E  + K      + ++ + + IA + Q YTQ+   RP G   ++ G D
Sbjct: 63  ADSRSQVQRARYEAANWKYKFGYEIPVDMLCKRIADISQVYTQNAEMRPLGCGMILIGID 122

Query: 477 YDGSPHLFQTEPSGIYYEWKANATGRSAKTVREFLEKNYTADEVATENGAVKLAIRALLE 656
            +  P L++T+P+G +  +KA + G        FLEK        T N  V+ AI  L  
Sbjct: 123 EEKGPQLYKTDPAGYFCGFKACSVGVKQTEANSFLEKKVKKKHAWTFNETVETAISCLSS 182

Query: 657 VVQS 668
           V+ +
Sbjct: 183 VLSA 186


>SB_40821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 172

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 22/61 (36%), Positives = 33/61 (54%)
 Frame = +3

Query: 480 DGSPHLFQTEPSGIYYEWKANATGRSAKTVREFLEKNYTADEVATENGAVKLAIRALLEV 659
           D  PH+FQT PS  Y++ KA A G  +++ R +LEK   A         +K  ++AL E 
Sbjct: 1   DMGPHIFQTCPSANYFDCKAMAIGARSQSARTYLEKYLDAFGDCEPEELIKHGLKALRET 60

Query: 660 V 662
           +
Sbjct: 61  L 61


>SB_40084| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 67

 Score = 37.1 bits (82), Expect = 0.013
 Identities = 16/28 (57%), Positives = 21/28 (75%)
 Frame = +3

Query: 432 GRRPFGISCLIGGFDYDGSPHLFQTEPS 515
           G RPFG+S L+ G+D D  P+LFQ +PS
Sbjct: 2   GVRPFGVSLLVAGWD-DDRPYLFQCDPS 28


>SB_46004| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 78

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = +3

Query: 297 ADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGRRPFG 449
           AD+R  + RA+ E  + K      + ++ + + +A + Q YTQ+   RP G
Sbjct: 26  ADSRSQVQRARYEAANWKYKFGYEIPVDMLCKRVADISQVYTQNAEMRPLG 76


>SB_510| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1907

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = -2

Query: 528 HNIYQKVQFGTSVVNHHSRILLSNTKYQMVDDHCSEYIS 412
           HN+ +  Q   +VV    R++ +NT+Y++ +DH  E I+
Sbjct: 602 HNVSEDKQGDVTVVTKTKRVVTNNTRYEIKNDHEPETIT 640


>SB_41821| Best HMM Match : Borrelia_orfA (HMM E-Value=2.7)
          Length = 616

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = -3

Query: 317 Y*YTSVCCQSGKCHYDVIIQKTYFPHSSFFLQFSNRFFLNT*DYHIDSSNSNCC*PLSDS 138
           Y +T  C      H+   +Q +++P S FFL  + R  +    +HI+ S  N   P    
Sbjct: 18  YKFTGFCAIEAPHHFYESLQPSFYPDSKFFLLSTLRLLIME-KFHINYSTKNIPLPSRSD 76

Query: 137 FL 132
           +L
Sbjct: 77  YL 78


>SB_37203| Best HMM Match : HALZ (HMM E-Value=6.6)
          Length = 107

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -3

Query: 242 HSSFFLQFSNRFFLNT*DYHIDSSNSNCC*PLS 144
           H + +L   NR   N  D HIDS++SNC  P+S
Sbjct: 53  HHASWLDCGNRTE-NNGDLHIDSASSNCLQPVS 84


>SB_287| Best HMM Match : Pentapeptide (HMM E-Value=0.1)
          Length = 288

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +2

Query: 272 RNGICRIDSRRSYINKPCTNRMSITQVNSRGSSNIGVYYKIHS 400
           R  + R    R+Y+ +    R  ITQ  + G  N G++   HS
Sbjct: 245 RTHLSRTRVTRTYLTRTRVTRTRITQFGNSGDLNSGIWKSCHS 287


>SB_24503| Best HMM Match : Transket_pyr (HMM E-Value=0)
          Length = 562

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/59 (28%), Positives = 31/59 (52%)
 Frame = +3

Query: 261 DDHVVMAFAGLTADARILINRAQIECQSHKLTVEDPVTLEYITRYIAGLKQKYTQSNGR 437
           DDHV++  AG+T D  +      +E +   + + DP T++ I +  AG+      +NG+
Sbjct: 441 DDHVLVIAAGVTLDEAMKAAN-HLELEGIHVRILDPFTVKPIDK--AGIVANAKAANGK 496


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,723,910
Number of Sequences: 59808
Number of extensions: 398318
Number of successful extensions: 894
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)