Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0138
         (624 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5478| Best HMM Match : NDT80_PhoG (HMM E-Value=3.6e-21)             29   2.3  
SB_19354| Best HMM Match : MPPN (HMM E-Value=2.9)                      27   9.4  

>SB_5478| Best HMM Match : NDT80_PhoG (HMM E-Value=3.6e-21)
          Length = 781

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 149 ENDVDVIWNSGXNLDFIFR 205
           ENDV+V+W+ G   D +FR
Sbjct: 254 ENDVEVVWSRGFTADSVFR 272


>SB_19354| Best HMM Match : MPPN (HMM E-Value=2.9)
          Length = 290

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -2

Query: 371 TIIYNIFRTAKMREYLYYNALLSCLYK 291
           T+I++  +T  ++ +L  NAL++C YK
Sbjct: 86  TLIFHFLKTFIIKYFLKNNALINCCYK 112


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,015,102
Number of Sequences: 59808
Number of extensions: 271192
Number of successful extensions: 560
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)