Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0138
         (624 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z81491-13|CAN86583.1|  181|Caenorhabditis elegans Hypothetical p...    29   3.6  

>Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical protein
            C06B8.7 protein.
          Length = 3118

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 25/59 (42%), Positives = 30/59 (50%)
 Frame = -3

Query: 619  HNRECDIYVSDLGTISLPSIRQGIV*VRGKFYLFIYNLNNTACCLLDGIDTNITLLKNI 443
            HNR   +Y+S   T S P +R G +    K  LF YN N+TA  L       ITLL NI
Sbjct: 2442 HNRG-GLYIS--ATSSSPVVRLGALI---KNCLFAYNSNSTALALSGNNYQVITLLNNI 2494


>Z81491-13|CAN86583.1|  181|Caenorhabditis elegans Hypothetical
           protein D1086.18 protein.
          Length = 181

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 417 SSIETNEYYIFFNNVIFVSIPSSKQHAVLLR 509
           +SIE N  Y FF   ++++IP  KQ    L+
Sbjct: 116 TSIEDNCVYSFFMTPVYINIPDKKQRCETLK 146


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,152,679
Number of Sequences: 27780
Number of extensions: 217881
Number of successful extensions: 364
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)