Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0136
         (533 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83234-5|CAB70171.2|  640|Caenorhabditis elegans Hypothetical pr...    30   1.2  
AF024503-14|AAG24088.2|  292|Caenorhabditis elegans Serpentine r...    29   2.8  
Z83116-3|CAB05561.1|  284|Caenorhabditis elegans Hypothetical pr...    27   6.4  

>Z83234-5|CAB70171.2|  640|Caenorhabditis elegans Hypothetical
           protein K09E4.2 protein.
          Length = 640

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = -2

Query: 526 FIIGTCIFYSLSINLSINALTICQGRLWTPCLHGSIKIFLCYI 398
           +++G C+FYSL++++ +N L       +T  L+ S    L Y+
Sbjct: 173 WLVG-CVFYSLAVSIKMNVLLFAPALFFTLLLNNSYMATLGYL 214


>AF024503-14|AAG24088.2|  292|Caenorhabditis elegans Serpentine
           receptor, class x protein21 protein.
          Length = 292

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
 Frame = -3

Query: 414 FFCAISCYIIE*HFFNIDI*FLDRCHLTETC--LVWYFVF*FFNKIVMYKFV 265
           F C +  +I+  HFF  D  F      T  C  + WY  F   N +VM   V
Sbjct: 133 FICTLFYFILGCHFFYSDTSFTFGFRETRRCTKITWYSDFMLNNSLVMVTLV 184


>Z83116-3|CAB05561.1|  284|Caenorhabditis elegans Hypothetical
           protein M01B2.3 protein.
          Length = 284

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -2

Query: 532 YTFIIGTCIFYSLSINLSINAL--TICQGRLWTPCLHGSIKIFLCYIMLYNRV 380
           YT  + T +FY L I+LS N +   +    +W     GS++  L  ++ + RV
Sbjct: 55  YTLNLTTLMFYYLLISLSANFIIKNLTFWLVWASTSIGSMRSLLALLISFERV 107


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,000,531
Number of Sequences: 27780
Number of extensions: 215385
Number of successful extensions: 399
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)