Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0136
         (533 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    23   1.5  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   6.0  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.9  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.9  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.9  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.9  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.9  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.9  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   7.9  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   7.9  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   7.9  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   7.9  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    21   7.9  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   7.9  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   7.9  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    21   7.9  

>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 333 TETCLVWYFVF*FFNKIVMYK 271
           T   L+ YF+F +FN +V ++
Sbjct: 14  TSFILINYFIFLYFNSLVRFR 34



 Score = 21.0 bits (42), Expect = 7.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 292 EKLKYKIPN*TSLSEMTPVEELYIY 366
           +KLK K+   T  +  TP +  YIY
Sbjct: 57  DKLKKKLEEWTGKNITTPWDYYYIY 81


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 373 LQHRYIIPRPVSSH*DLFSLVF 308
           +QH +  P P++S  +L  L F
Sbjct: 348 IQHHFFYPDPLASKYELHGLKF 369


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 471 P*QYVRGDCGLPVSTG 424
           P  Y+R   G P+STG
Sbjct: 362 PSGYIRSAFGTPISTG 377


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 471 P*QYVRGDCGLPVSTG 424
           P  Y+R   G P+STG
Sbjct: 362 PSGYIRSAFGTPISTG 377


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 471 P*QYVRGDCGLPVSTG 424
           P  Y+R   G P+STG
Sbjct: 362 PSGYIRSAFGTPISTG 377


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 471 P*QYVRGDCGLPVSTG 424
           P  Y+R   G P+STG
Sbjct: 362 PSGYIRSAFGTPISTG 377


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 471 P*QYVRGDCGLPVSTG 424
           P  Y+R   G P+STG
Sbjct: 362 PSGYIRSAFGTPISTG 377


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 471 P*QYVRGDCGLPVSTG 424
           P  Y+R   G P+STG
Sbjct: 362 PSGYIRSAFGTPISTG 377


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 184 DTVAILL*SIICVKFITF*FISNKGT 107
           D +A +   +    F+TF FI  KGT
Sbjct: 463 DVIARITFPVAYFMFLTFFFIHYKGT 488


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 184 DTVAILL*SIICVKFITF*FISNKGT 107
           D +A +   +    F+TF FI  KGT
Sbjct: 449 DVIARITFPVAYFMFLTFFFIHYKGT 474


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 184 DTVAILL*SIICVKFITF*FISNKGT 107
           D +A +   +    F+TF FI  KGT
Sbjct: 483 DVIARITFPVAYFMFLTFFFIHYKGT 508


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 184 DTVAILL*SIICVKFITF*FISNKGT 107
           D +A +   +    F+TF FI  KGT
Sbjct: 432 DVIARITFPVAYFMFLTFFFIHYKGT 457


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 292 EKLKYKIPN*TSLSEMTPVEELYIY 366
           +KLK K+   T  +  TP +  YIY
Sbjct: 154 DKLKKKLEEWTGKNITTPWDYYYIY 178


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 471 P*QYVRGDCGLPVSTG 424
           P  Y+R   G P+STG
Sbjct: 430 PSGYIRSAFGTPISTG 445


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 471 P*QYVRGDCGLPVSTG 424
           P  Y+R   G P+STG
Sbjct: 430 PSGYIRSAFGTPISTG 445


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 292 EKLKYKIPN*TSLSEMTPVEELYIY 366
           +KLK K+   T  +  TP +  YIY
Sbjct: 169 DKLKKKLEEWTGKNITTPWDYYYIY 193


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,233
Number of Sequences: 438
Number of extensions: 2619
Number of successful extensions: 19
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15090993
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)