Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0135
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    26   5.5  
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    26   5.5  
SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po...    26   5.5  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    25   7.3  
SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces ...    25   7.3  
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    25   7.3  
SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73 family...    25   9.6  

>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +3

Query: 300 YGFVRDRLNGSFKPYVENTPRRNRPSRKGS 389
           Y F+R  + G FKP  E    +  P  K +
Sbjct: 751 YSFIRTSMKGGFKPAGETADDKPEPQTKNA 780


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = -1

Query: 229 TVTRFM*LCISFYCICRYCENKTNFVLTDDFNVRIVNMCLLSVFGWLVL 83
           T+T++M L   +  I  YC + +  +  D+FN +  N+   +++  LVL
Sbjct: 43  TITKYMEL---YTAIHNYCADASKTITVDNFNDQTANVLGEALYNNLVL 88


>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 467

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = -2

Query: 657 IFQWQLKYFGIFKMRFYDW 601
           + Q++L+YF +F ++ YD+
Sbjct: 139 VLQYKLRYFPVFDLKIYDF 157


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
            Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -1

Query: 442  RSQSLQRSRLALFSRLRVLPLREGRFLLGVF 350
            + ++L+R  + +F RL  L   +GRF+ G+F
Sbjct: 1514 KQKALRRYCMEIFERLYNLQSEDGRFVNGLF 1544


>SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 634

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 98  KYRQQTHIYDPHIEIIS*NKVCFIFAISTDA 190
           KY   T +Y PHI++    ++   F   TDA
Sbjct: 66  KYAMATGVYKPHIKVFDFAEMSLKFERHTDA 96


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +1

Query: 505 SDKKELNNNNQQFIDLYLEDASLGRIPD-TTEKPVIESHFKYAKV 636
           +DK EL  N+ +F  L +++  L   PD   ++P   SH K+ ++
Sbjct: 636 NDKLELYFNDHEFSYLMVQENYLNTTPDRIRQEPPKMSHLKHLEL 680


>SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 371

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +2

Query: 179 STDAIKG-DAELHKTSNSSNGTVVEKKPISRHAKLLNSKVVIRF 307
           STDA    D +LHK S   N      + +S H  +L+    I F
Sbjct: 127 STDAATSMDVDLHKKSEEVNWLFENTRTVSNHNSVLHGIKPIDF 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,627,770
Number of Sequences: 5004
Number of extensions: 51986
Number of successful extensions: 154
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)